LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g2392	ATGTTAACCGCAGTCCTCAGAAGAACCAGTTCCACCCTCTCAAGGCGCGGTTTCCCCGCCGCCTTAATCTCTGCCTCCACCGCCACCGCCACCGCCACCGCCGGCAACCACTTCCGGCTACTCTCCGCTGCCGTCAATTCCAGAACCTTCCACTCCAACCCTGGCCCCTTGAATTTCCGCGCCTCTTCATGTCACCGCGCGGAATACGCCGTGGACGATTTCCCTTACGAAGAAGGGTCCAAAGGAAACGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGAATTTCGCAGGATATTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGGTCATTCAGTTTAATGCTAAGCATGGGCGGGGGAGGGATCCTTTGGCTTTGGTGTTGGCTCCGACCAGAGAGCTTGCGCGACAGGTTGAATCAGAGTTCTGTGAGTCGGCACCTAATTTGGATACAATTTGTGTTTATGGGGGTACACCCATTTCTCAGCAGATGAGGCAGCTTGATTATGGGGTTGATATTGCTGTGGGGACGCCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCGCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAGGTGGGCTTTCAGGAAGACGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCGCGCAATTACTTGAATAATCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAATTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCACCTCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCGTATGCCATGGCAAGAAGTGTTAAATGTGAGGCTTTGCATGGAGACATATCACAAGCTCAAAGGGAGAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGATCTTCCCAACAATTCAGAGATATTTGTTCATCGTTCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCAATTCTTGTGTATACAGAAGATCAATCGAGGGCTGTTAAGCTTATAGAGCGTGATGTAGGCAGTAGATTTTCAGAGCTGCCACGGATTGCTGTTGATAGTGCATCAGCGGTCATGGTTGATAGCATGGGTGGCGGGCGATTTGGTTCTTTTGGAGGTAACAGGGATCGTCGATACGGTGATATGGGTTTTGGATCTGGCCATTCTGGGGGTTACAGTAACCCTGGTTCTGGCCGCTCTAGCTTTGGAAATTCCGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTTTGGCTCATCTGGTGGCTTTGGTTCTGGTCAATCAGGAAGTAGATCTGGTGGATCATCCAGCAGGTCTAGGTTTAGTCGCTCAGATGATTTTGGGGGATTTGGTGGTTCAGATCGTTCGGGTGGTTTTGGAGATTTTGGCTCAGGTCAGTCTAGTGGCTTCGGTGGTTCTCGTGGTAGTAAGCAGAACAATAGAAGACCTTTTTAA	1788	0.4765	MLTAVLRRTSSTLSRRGFPAALISASTATATATAGNHFRLLSAAVNSRTFHSNPGPLNFRASSCHRAEYAVDDFPYEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQFNAKHGRGRDPLALVLAPTRELARQVESEFCESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFSELPRIAVDSASAVMVDSMGGGRFGSFGGNRDRRYGDMGFGSGHSGGYSNPGSGRSSFGNSGERFGGQNYNRFGSSGGFGSGQSGSRSGGSSSRSRFSRSDDFGGFGGSDRSGGFGDFGSGQSSGFGGSRGSKQNNRRPF*	596

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso2g2392	595	Pfam	Helicase conserved C-terminal domain	322	427	IPR001650	-
	Gso2g2392	595	CDD	DEADc	99	294	-	-
	Gso2g2392	595	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	119	293	IPR014001	-
	Gso2g2392	595	SMART	helicmild6	347	427	IPR001650	-
	Gso2g2392	595	Gene3D	-	89	297	IPR027417	-
	Gso2g2392	595	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	162	448	IPR027417	-
	Gso2g2392	595	Pfam	DEAD/DEAH box helicase	112	281	IPR011545	GO:0003676\|GO:0005524
	Gso2g2392	595	MobiDBLite	consensus disorder prediction	501	554	-	-
	Gso2g2392	595	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE	40	513	-	-
	Gso2g2392	595	MobiDBLite	consensus disorder prediction	497	595	-	-
	Gso2g2392	595	MobiDBLite	consensus disorder prediction	571	595	-	-
	Gso2g2392	595	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	88	116	IPR014014	GO:0003724
	Gso2g2392	595	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	40	513	-	-
	Gso2g2392	595	Gene3D	-	312	469	IPR027417	-
	Gso2g2392	595	SMART	ultradead3	107	310	IPR014001	-
	Gso2g2392	595	CDD	SF2_C_DEAD	319	436	-	-
	Gso2g2392	595	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	322	466	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g2392	Gso-Chr2	48508263	48513284	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g2392	93	459	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.423	8.58e-68	224

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g0286	14	2498418	2503299	Gso2g2392	2	48508263	48513284	GST
	Gso8g2519	8	42422911	42430603	Gso2g2392	2	48508263	48513284	PCT
	Gso2g2392	2	48508263	48513284	Gso8g2519	8	42422911	42430603	PCT