Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2390 ATGGCTTTCTTTAGGAACTTTTCAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGATTGTACTGATGCAACTTCTAGTGAGAAGGAATTTGATATGAACATGGAGGCACAGTATGATAGTGATGGCGAACCAGATGGTTCCAGTAGACTGCAAACTGAGGCAACAGCTGATGATGGAGATGCTGTGAAAGAATCAAACTTGCAGACTACTGGTAGTAAAACAGCTATGGTCGGAAGGTGGGGTTCAACATTTTGGAAGGACTGTGGGCAAATGGACCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCGGGAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCCAAGAGGTCACTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGACTCATTGCATTATGGTGGGATCAAAAAGCCCACTGGATCGAATTCATGGCCACAACGGATGTCGACCTCTGCAAATAGAACTTTGCATAGGAATTTGAGGTTTTCAGATGATGTTGAAGATAATGATGGTGAGGATGAAGATGATGATGATGGTGATAATGATAATGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCGCCACAAGTGGTCATGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGACGCAAATATAGTTGTCTCCGATGATGATGAACCTTTCTATGCTAAAAGACCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAACATAAAATCTACCAGAGAACGTAAAGTGTATGCTGCATCTGGTCGACAAAGAAGAGTTAAATCGTCTTTTGAGGACAACGAGTCAACAACGGAGGATTCCGACAGTGATGGTGATGAGGATTTCAAAAGCACAAAAAAGCGGAGTGTTCATGTCCGCAAGAACAATGGTCGCTCGTCTGCAGCCACAGGCTTTTCTTCGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACGGTTAGGAAGGTATCATATGTTGAAAGTGAAGAGAGTGAAGAAGCTGATGAAGCGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAAGGGCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTTCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATCAGGTACAGGAGGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAACGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACCTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCTATGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGAAACAACCTGAATGGTTGAAGGGTGGAGAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTAGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGAGAAAAAACCTGGGAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCTTTGCTTCATTTCCTTGATCCGGACAAGTTCAGGAGCAAGGATGAATTTGTTCAGAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGCTTGCAAATCTGCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAACGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTTTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAAATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTTCGACAACAAGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAATCTTGCTACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATTTATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTCGGAGCAGAGGAGCTTTTTAAAGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTGTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAACTGACGGGGAACAAGGAAATGAGTTATTAGGTGCTTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTTCAAGCAGAGGAAGCTCTTGCTCCTCGATCGGCTAGAAATATTAAAAGCTATGCAGAGGTTGATCCATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAGCAAGTTCCAAAACGCCGGAAAGCAGAGTATTCTGCTCATGCAGTACCAATGATTGAGGGAGCATCTGTCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGACGCACTTCGTTTTTCTCGTTCAGTTTTGAAATATGGCAATGAGAGCCAAATCGACTTAATTGCTGCTGAGGTTGGTGGTGCTGTTGGGGCAGCTCCACCTGGAGCACAGATTGAACTTTTCAATGCTCTTGTTGATGGTTGTACAGAAGCAGTAGAACTTGGAAATCTAGATGCAAAGGGGCCTTTGCTGGATTTTTTTGGTGTACCAGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAGCTTTTGGCAAAGCGCATTGGTCGATATGAAGATCCTGTCGCACAATTTCGCGTTCTGTCATATCTCAAACCATCGAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGCTCCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTGAAAAATGCCAACAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAGAGAAAATATGATTAATTTATCACTGTTACGTGGGCAGGAGAAAAAGAAAAAATCGAGTTCTGTTAATGTCCAAATGAGAAAGGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCGAAAATACGCAACTATTTACAACTTCTTGGGAGAAGGATAGATCAAATTGTGTTAGAACATGAACAGGAACCCTATAAGCAAGATAGAATGACCGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGAGGTTGGCCCCTCTCACACAAATGGATCGGTATCTGTTTCATTTAGCAGAAATGGAAATCCATTCCGTTTCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGCTACCTATCAAATGCCAGAACCAGTTGATAATACTGGGAAATCCGAGGCATGGAAACGAAGAAGAAGAACTGAAAGTGACAATCACTTCCAGGGTCAGCCACCACCTCAAAGGACCGTTAGTAATGGAGTCCGGATTGCTGATCCTAACTCACTCGGGATCCTAGGTGCTGGGCCGTCGGACAAACGCTTTGCTAGTGAGAAACCTTATAGGACACAACCTGGTGGTTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAA 5301 0.409 MAFFRNFSNDTVSHGVMEDKSQGQNANRVHRSVGNDCTDATSSEKEFDMNMEAQYDSDGEPDGSSRLQTEATADDGDAVKESNLQTTGSKTAMVGRWGSTFWKDCGQMDPQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPTGSNSWPQRMSTSANRTLHRNLRFSDDVEDNDGEDEDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATSGHAANKDKDWEGEGSDEDDDSDANIVVSDDDEPFYAKRPKGRQRGKIGQNIKSTRERKVYAASGRQRRVKSSFEDNESTTEDSDSDGDEDFKSTKKRSVHVRKNNGRSSAATGFSSRNSEVRTSSRTVRKVSYVESEESEEADEAKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDSEIDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISNDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAVQGKMVDSQRKKSKASLRKLEKQPEWLKGGELRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKKPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVKLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKETDGEQGNELLGAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSNKRKKKEPEPPEQVPKRRKAEYSAHAVPMIEGASVQVRNWSYGNLSKRDALRFSRSVLKYGNESQIDLIAAEVGGAVGAAPPGAQIELFNALVDGCTEAVELGNLDAKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPVAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSRVGRKPSKKERENMINLSLLRGQEKKKKSSSVNVQMRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAEVGPSHTNGSVSVSFSRNGNPFRFHMERQRGLKNMATYQMPEPVDNTGKSEAWKRRRRTESDNHFQGQPPPQRTVSNGVRIADPNSLGILGAGPSDKRFASEKPYRTQPGGFPSRQGFSSGIK* 1767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2390 1766 MobiDBLite consensus disorder prediction 317 345 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1645 1659 - -
Gso2g2390 1766 Pfam SNF2-related domain 653 922 IPR000330 GO:0005524|GO:0140658
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1707 1724 - -
Gso2g2390 1766 SUPERFAMILY Chromo domain-like 426 509 IPR016197 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1 431 - -
Gso2g2390 1766 Pfam Chromo (CHRromatin Organisation MOdifier) domain 543 597 IPR023780 -
Gso2g2390 1766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 855 IPR027417 -
Gso2g2390 1766 ProSiteProfiles Chromo and chromo shadow domain profile. 542 606 IPR000953 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 223 262 - -
Gso2g2390 1766 Gene3D - 865 1095 IPR027417 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1640 1659 - -
Gso2g2390 1766 CDD CD2_tandem 540 596 - -
Gso2g2390 1766 Coils Coil 1094 1114 - -
Gso2g2390 1766 CDD SF2_C_SNF 940 1075 - -
Gso2g2390 1766 SMART ultradead3 630 830 IPR014001 -
Gso2g2390 1766 SUPERFAMILY Chromo domain-like 521 597 IPR016197 -
Gso2g2390 1766 Pfam Helicase conserved C-terminal domain 951 1064 IPR001650 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 372 398 - -
Gso2g2390 1766 Gene3D - 625 864 IPR038718 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 105 125 - -
Gso2g2390 1766 Gene3D - 416 541 - -
Gso2g2390 1766 SMART helicmild6 980 1064 IPR001650 -
Gso2g2390 1766 Gene3D - 1361 1474 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1225 1254 - -
Gso2g2390 1766 SMART chromo_7 427 510 IPR000953 -
Gso2g2390 1766 SMART chromo_7 540 599 IPR000953 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 79 94 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1220 1254 - -
Gso2g2390 1766 ProSiteProfiles Chromo and chromo shadow domain profile. 429 517 IPR000953 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1 40 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1691 1706 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 196 214 - -
Gso2g2390 1766 Pfam Domain of unknown function (DUF4208) 1543 1635 IPR025260 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 399 431 - -
Gso2g2390 1766 Coils Coil 406 426 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 280 295 - -
Gso2g2390 1766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 646 818 IPR014001 -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 1683 1766 - -
Gso2g2390 1766 Gene3D - 544 596 - -
Gso2g2390 1766 MobiDBLite consensus disorder prediction 126 169 - -
Gso2g2390 1766 CDD CD1_tandem 427 507 - -
Gso2g2390 1766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 858 1140 IPR027417 -
Gso2g2390 1766 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1668 - -
Gso2g2390 1766 SMART DUF4208_2 1531 1636 IPR025260 -
Gso2g2390 1766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 954 1105 IPR001650 -
Gso2g2390 1766 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1668 - -
Gso2g2390 1766 Coils Coil 1148 1168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2390 Gso-Chr2 48465570 48486039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2390 656 1091 RAD5 or RAD16-like Gene Family AT1G02670 25.794 1.11e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso2g2390 SNF2_N 1.1e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2390 K11367 - gmx:100808039 3308.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0288 14 2521120 2541574 Gso2g2390 2 48465570 48486039 GST