Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2383 ATGGAAGGGTTCGGTAGAATGGCTTCGGATCTTAGCAGAACCGGTCCTGTGGAAAGAGACATTGAACAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGGGGAAGGCCCAAGATTTGCCCCTTCCGTCTTTCCAATGACGAATCTGTTTTGATATGGTTCTCCGGGAAAGAAGAGAAGCACCTTAAACTGAGTCAGGTCTCTAGAATTATATCTGGGCAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCTCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACCAGAAGAAGTTCTCCCATGAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGACAGTGGGGATCACCTTCGCCTTCATAGTCCATACGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTAGATGTGGTTTTGTATGCTGTCCCTCAGAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCAGATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCCAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACTGGTGATGGTGTTTTGGGTGGTGGGAATCACCGAGTTGGGAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCCAAATCTTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCGGCCCTAGTGACCAAACAAGGCGAAATTTTTTCCTGGGGGGAAGAAGCAGGCGGCAGACTTGGGCACGGTGTTGACTCTGATGTTCTCCATCCTAAGCTTATAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCATACATGTGCTGTTACACTTTCTGGTGATCTTTATACATGGGGTAATGGCACATACAATTGTGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAACGGCCCCTTGGAAGGCATACATGTTTCATATATTTCTTGTGGACCGTGGCACACTGCTGTTGTAACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACAGGAAAAGTGTTTCATTACCAAGGGAAGTAGAGTCTCTCAAGGGTCTTCGAACAGTGCGGGCTGCATGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCCGTGTTGCCCTTGTTAATGTTAAACCCAATTTTTGTCAAGTTGCTTGTGGTCATAGTCTCACTGTTGCACTTACCACTAAGGGCCATGTCTATACAATGGGTAGTCCAGTCTATGGCCAGTTAGGAATTCCTCAAGCTGATGGGAAGCTACCAATCTGTGTTGAATGGAAATTGTCAGAGAGTTTTGTGGAGGAGATAGCTTGTGGGGCATATCATGTTGCCGTCTTAACTTCAAGGACTGAAGTTTACACTTGGGGGAAGGGTGCAAATGGCCGTTTAGGCCATGGCGATACAGATGATAGAAATACCCCAACATTAGTAGAAGCTCTGAAAGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATTTGTTTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCGGGCTGTCGTATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTCAAGGCTTCGATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTTAGGAAAACGGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAGTTGCCAATCAGGGGCCTCTGGAGTTAATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTCAAACAGGTGGAAAGCAGATCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCCATTCCAAATGGGGGTTCACAATGGGGAGCATCGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCTGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCGACTACACCAACCCCAACACTGGGAGGTCTTACATCCCCAAATATAGTTGTGGATGATGCTAAGAGGACTAATGATAGTCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCTCAACTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCTGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTACAGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCTGCTAGGACTGTGAAATCACCGACTCTTACTGCTTCTTTTGGTTCCAATCCTTGTTCCAATGATGTTAGCTATGCTTCCATTGATCGGTTAAATATTCAAGCTACAAGCCCAGAGGCAGATTTAACTGGATCAAACAACCATTTACATTCAAATGGATCAAGCACTGTCAGTAGCCGTAGCACAGGACACACTAAACAGAGCCAATCAGATTCAACAAATAGAAATGGGAGCAGAACTAAGGACAGTGAATCCCGTAATGAAACTGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACACTCACCTCCCTTCCAGGAGGTATAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGCGGAAGAGTATACGAACAGTACAATGTGCGCATGATTGACAAGTCTTCTGTTGGTGTTGGGAGTGAAGACCTGGCTCATTGA 3330 0.4363 MEGFGRMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGRPKICPFRLSNDESVLIWFSGKEEKHLKLSQVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPMNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGQMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCLGVKMDSLFPKSLESAVVLDVQNIACGGRHAALVTKQGEIFSWGEEAGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNCGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTRVALVNVKPNFCQVACGHSLTVALTTKGHVYTMGSPVYGQLGIPQADGKLPICVEWKLSESFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGVANQGPLELIDKDDKLDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPIPNGGSQWGASNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPNIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARTVKSPTLTASFGSNPCSNDVSYASIDRLNIQATSPEADLTGSNNHLHSNGSSTVSSRSTGHTKQSQSDSTNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGIIDLKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRMIDKSSVGVGSEDLAH* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2383 1109 MobiDBLite consensus disorder prediction 835 865 - -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 143 173 - -
Gso2g2383 1109 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 985 1023 - -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 552 IPR000408 -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Gso2g2383 1109 Coils Coil 923 943 - -
Gso2g2383 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Gso2g2383 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Gso2g2383 1109 SUPERFAMILY PH domain-like 20 128 - -
Gso2g2383 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 1024 1040 - -
Gso2g2383 1109 Gene3D - 233 495 IPR009091 -
Gso2g2383 1109 Gene3D - 496 669 IPR009091 -
Gso2g2383 1109 Pfam Unstructured region between BRX_N and BRX domain 960 1029 - -
Gso2g2383 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 499 549 IPR000408 -
Gso2g2383 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Gso2g2383 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 380 432 IPR000408 -
Gso2g2383 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Gso2g2383 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Gso2g2383 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 552 601 IPR000408 -
Gso2g2383 1109 Pfam Transcription factor BRX N-terminal domain 918 951 IPR027988 -
Gso2g2383 1109 CDD FYVE_like_SF 666 719 - -
Gso2g2383 1109 CDD PH_PLC_plant-like 19 129 - -
Gso2g2383 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 1095 - -
Gso2g2383 1109 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 328 IPR000408 -
Gso2g2383 1109 SUPERFAMILY RCC1/BLIP-II 266 658 IPR009091 -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 985 1040 - -
Gso2g2383 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Gso2g2383 1109 SMART fyve_4 655 724 IPR000306 GO:0046872
Gso2g2383 1109 Gene3D - 20 137 IPR011993 -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 767 806 - -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 790 806 - -
Gso2g2383 1109 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 21 1095 - -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 135 191 - -
Gso2g2383 1109 MobiDBLite consensus disorder prediction 729 755 - -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Gso2g2383 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Gso2g2383 1109 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Gso2g2383 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 730 IPR013083 -
Gso2g2383 1109 Coils Coil 867 908 - -
Gso2g2383 1109 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Gso2g2383 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Gso2g2383 1109 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2383 Gso-Chr2 48423438 48431641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2383 927 1100 Major Intrinsic Protein MIP AT1G31880 34.043 5.88e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2383 - - gmx:100806439 2142.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0293 14 2569008 2577297 Gso2g2383 2 48423438 48431641 GST
Gso8g2511 8 42323303 42334597 Gso2g2383 2 48423438 48431641 PCT
Gso2g2383 2 48423438 48431641 Gso8g2511 8 42323303 42334597 PCT