Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2380 ATGTGGTCCACCCCAACTAGGTCAATCAATTACCCTGAAATGGGGATGTTCGTGGTGGCACCAGCTTCTTCCTTCCACCCTAATCTCCACCACCACCACCACCACCAGCCGTCGCCGAACGACCCCGCCGTCATGGTGGATTCACTCAACCCCGCCACTGCACTCGGCGTCGGCGTCATCCCCCTCCTCGCCCCGACGCCGTGCCACGAATCCGACAACAACATCCTCGGAAACAGGACACGTGGCGGTGGAATTCAGTTTTGGCAAGACCAACAACAACATAATCAAGGCAACTACACGAAGAAGCCCCAGCAGGGTCTTCTCGACCATAATAGTAACACCAGTTCGGGGAATTTGGTTCAGAACAGTGGCGGGGTAACTGCTTCTGGAACTAGTAGCGGAGGAACAACGTGCCAAGATTGTGGAAACCAGGCAAAGAAAGATTGTACCAATAGAAGGTGCAGAACTTGTTGCAAAAGCCGAGGCTTTGATTGCCCTACACATGTTAAGAGCACTTGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACGTCGGCCACCGTGGCGCCGGTTGCCGGCTCTAGTGGCTCCACTTCCGGCACTAAAAAACCTAGGCTCATTGCTTCACAAACCACAACAACCTCTCACACATCCACTTCTAACACCACCCCTCCTAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGGTTCAAAGAGTCATTACCGGGGCAAGTACGTGCACCAGCGGTTTTCAAGTGTGTAAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTATGCGTATCAGGCTGTGGTGAAGATTGGTGGCCACGAATTCAAAGGGTTTCTCTATGATCAAGGTGCGGAGAATAGGGATGTGTATCCTAACCTATCTGAGTTGCATTTGGGTGGTGGGAATGGTGGAAGTGGTGGTGCGGGAAGAAATGGGGTTTCATCTTCCTCTCCAATGATGGATCCTAATGATGTTTATGCAGCTTCGGGTGGAGGGTTATTAGGGGGTTCTTCAGCATATGGTAATCCAATGAATTGA 1062 0.5264 MWSTPTRSINYPEMGMFVVAPASSFHPNLHHHHHHQPSPNDPAVMVDSLNPATALGVGVIPLLAPTPCHESDNNILGNRTRGGGIQFWQDQQQHNQGNYTKKPQQGLLDHNSNTSSGNLVQNSGGVTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATVAPVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHEFKGFLYDQGAENRDVYPNLSELHLGGGNGGSGGAGRNGVSSSSPMMDPNDVYAASGGGLLGGSSAYGNPMN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2380 353 MobiDBLite consensus disorder prediction 95 146 - -
Gso2g2380 353 MobiDBLite consensus disorder prediction 316 330 - -
Gso2g2380 353 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 245 291 IPR006511 -
Gso2g2380 353 MobiDBLite consensus disorder prediction 95 145 - -
Gso2g2380 353 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 353 - -
Gso2g2380 353 Pfam Domain of unknown function (DUF702) 135 293 - -
Gso2g2380 353 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 137 179 IPR006510 -
Gso2g2380 353 MobiDBLite consensus disorder prediction 186 245 - -
Gso2g2380 353 MobiDBLite consensus disorder prediction 309 332 - -
Gso2g2380 353 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 353 IPR007818 GO:0003700|GO:0006355
Gso2g2380 353 MobiDBLite consensus disorder prediction 189 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2380 Gso-Chr2 48368721 48372436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2380 13 334 C2H2 Transcription Factor Family AT5G12330 51.775 3.91e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso2g2380 DUF702 2.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2380 - - gmx:100776306 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0297 14 2623058 2646082 Gso2g2380 2 48368721 48372436 GST