Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2366 ATGGCTTTCACACTAGACAGGTGTGAAGATAGCATGGTGTTCACTATGGAGTCTCACAAGTCAGTGCCTGCTCCCTTTCTGACAAAGACATACCAACTTGTTGATGACCCTCACACTGACCACATTGTGTCTTGGGGTGATGATGAAACTACATTTGTTGTGAGGAGGCCCCCAGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAATAACTTCTCAAGCTTTGTTAGGCAGCTAAATACCTATGGATTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCAAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCACTATCAACAACACTACCACATGCATGACCAACCACCACAGCTTCTTCAGCCAGATGAAAACATGTGTTGGATTGATGCTCCTCCATTACCATCTCCTAAGCCAGGCACTGACATCTTAGCAGCACTTTCTGAGGACAACCAAAGACTGAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAACCTATACAATGACATCATATACTTCATCCAAAACCATGTAAGTCCTGCTGCTTCCTATGATGAACAAAGAAGCAGAAGTGCTATTCTGAAGATGGTGGAATTGGATTCATCACCAAATGTTATAAGACCAACTAAGAGCCGTATTATGGAGAAGTCTTTGGTGACTAATTCTAGTGATGAGCCTAATAATAGTTCTGTGAAGCTCTTTGGTGTTCCTCTTTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTGTTCAACAAGAATAG 822 0.4258 MAFTLDRCEDSMVFTMESHKSVPAPFLTKTYQLVDDPHTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPQLLQPDENMCWIDAPPLPSPKPGTDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPAASYDEQRSRSAILKMVELDSSPNVIRPTKSRIMEKSLVTNSSDEPNNSSVKLFGVPLCGKKRLHPGNLVQQE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2366 273 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 264 IPR027725 -
Gso2g2366 273 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso2g2366 273 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Gso2g2366 273 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso2g2366 273 Gene3D - 18 117 IPR036388 -
Gso2g2366 273 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 17 264 - -
Gso2g2366 273 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso2g2366 273 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso2g2366 273 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso2g2366 273 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2366 Gso-Chr2 48237297 48238777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2366 20 265 HSF AT1G46264 50.680 1.22e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso2g2366 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2366 K09419 - gmx:100527682 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0309 14 2776861 2778362 Gso2g2366 2 48237297 48238777 GST