Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2351 ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAAGCCAGGGGACACTTTTCCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTTGACAGTTGAGCCATGCAACGAGTATATCCAGAGCTGTGACATTGTTGCATTCAACAAAATTTAA 672 0.4702 MAVTFSDLHTEEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGDTFPNAAKWYDAVSSQLAPSFPGHAQGVRFSGAAAPAEAAPAKAAATAEEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCNEYIQSCDIVAFNKI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2351 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Gso2g2351 223 Gene3D - 6 63 - -
Gso2g2351 223 Gene3D - 127 223 IPR014717 -
Gso2g2351 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 - -
Gso2g2351 223 MobiDBLite consensus disorder prediction 111 131 - -
Gso2g2351 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Gso2g2351 223 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Gso2g2351 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Gso2g2351 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Gso2g2351 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Gso2g2351 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Gso2g2351 223 PANTHER ELONGATION FACTOR 1-BETA 2 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2351 Gso-Chr2 48098708 48101262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2351 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 74.561 4.81e-109 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2351 K03232 - gmx:100500082 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0334 14 3011962 3014906 Gso2g2351 2 48098708 48101262 GST
Gso13g0512 13 17442835 17445348 Gso2g2351 2 48098708 48101262 PCT
Gso2g2351 2 48098708 48101262 Gso13g0512 13 17442835 17445348 PCT