Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2340 ATGCCCATGGCTAAGAAACGAAAGCTTCGATCCTCCAACCCAGAACCCACCAAACCCGTCGAGCCACAGCAACAGAACCATGAGACTGTTGAACTCGACCAACAGCAACCCATCCCCGAACCAACCCTAGAAGACTCCAACACCATGGCCATCGACGAACCAAAACATGAACAAGAAGAAGAACCGCAAAACGCCGAAAGCGAACAAGAGGTAGAGGAAGAGGAAGAGGAAGAAGATGAACAACAAGAGGAGCAGGAACCAGAAACTCGAGAAGGGCAACCGGGACCAGAAACCCTAGAAGCTGCAAACCAAGCCGAAGCGAACGGTAGCAATGAAGGAAACAACGAAGAAGAGGAAGAGGAGGATCTCACACTAGAAGAAGAGCCCGTGGAGAAGCTTCTGGAACCGTTCACGAAGGAGCAGCTCCACTCTCTCGTCACGCAGGCCGTGGATATGTTCCCCGAATTCGTCGATAGCGTGCGCCGGATTGCTGACGTGGACCCCGCGCACCGGAAAATCTTCGTCCACGGCCTCGGCTGGGATGCCACCGCCGAAACCCTAACCTCCGTGTTCGGGAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGTAAATCAAAGGGTTACGCCTTTATCCTCTTCAAGCACAGAGACGATGCTCGAAAGGCGCTGAAACACCCTCAGAAGAAGATCGGAAACCGCACCACCTCGTGCCAGCTGGCCTCCGCTGGCCCCGTTCCGGCTCCACCGCCGAGCGTGACCCCGGTGTCTGAGTACACCCAGAGGAAGATTTTTGTGAGCAATGTGAGTGCTGAGATTGATCCTCAGAAGCTGCTTGAATTCTTCAAGCAGTTTGGAGAGGTTGAGGATGGTCCTCTTGGTTTGGATAAGAACACTGGGAAACCTAAGGGTTTTGCGCTTTTCGTGTATAAGTCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCCAATAAGAACTATGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGGAGCAAGGGGTATCATCATCAACAGCATTCTCATTCTCATCATCACCATCACCACCATCAGCCTCATTATCAGAGGAAGGAGAAGAACAAGTATTCCTCCGGTGGTGGTGGACCATCACATGGAAGTGGTCATTTGATGGCGCCCTCGGGCTCTGCTGTGGGGGGTTTCAACCCTGGTGTGCCGGCCCAGGGGTTGAATCCGGTGCTTGGACAGGCGTTGACTGCATTGATTAATCAGGGAGCTGGATTGGGGCTTGGGAATCTTCTTGGAGGGCTTGGTGGTGCCCCCGTTAACCAGGGGGGGCCGCCTGCTCCATATGCGAATCAACCTGCTATGGGGTATGGGAACCAGCCAGCAATGCAACCCGGATACCAGAATCCTCAAATGGGACAGAGCAGTGGTGTGAGACCTCATCCTGGTGCTGGTGCTCCTTACATGGGTCATTAG 1491 0.5372 MPMAKKRKLRSSNPEPTKPVEPQQQNHETVELDQQQPIPEPTLEDSNTMAIDEPKHEQEEEPQNAESEQEVEEEEEEEDEQQEEQEPETREGQPGPETLEAANQAEANGSNEGNNEEEEEEDLTLEEEPVEKLLEPFTKEQLHSLVTQAVDMFPEFVDSVRRIADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPSVTPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPNKNYEGHTLYCQKAVDGPKGSKGYHHQQHSHSHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSGSAVGGFNPGVPAQGLNPVLGQALTALINQGAGLGLGNLLGGLGGAPVNQGGPPAPYANQPAMGYGNQPAMQPGYQNPQMGQSSGVRPHPGAGAPYMGH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2340 496 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 483 - -
Gso2g2340 496 MobiDBLite consensus disorder prediction 63 86 - -
Gso2g2340 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 344 IPR000504 GO:0003723
Gso2g2340 496 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 483 - -
Gso2g2340 496 MobiDBLite consensus disorder prediction 473 496 - -
Gso2g2340 496 Gene3D - 257 391 IPR012677 -
Gso2g2340 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Gso2g2340 496 SMART rrm1_1 268 340 IPR000504 GO:0003723
Gso2g2340 496 SMART rrm1_1 172 244 IPR000504 GO:0003723
Gso2g2340 496 CDD RRM_RBM24_RBM38_like 267 342 - -
Gso2g2340 496 CDD RRM_RBM24_RBM38_like 171 246 - -
Gso2g2340 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 337 IPR000504 GO:0003723
Gso2g2340 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 240 IPR000504 GO:0003723
Gso2g2340 496 SUPERFAMILY RNA-binding domain, RBD 251 362 IPR035979 GO:0003676
Gso2g2340 496 MobiDBLite consensus disorder prediction 16 43 - -
Gso2g2340 496 SUPERFAMILY RNA-binding domain, RBD 163 248 IPR035979 GO:0003676
Gso2g2340 496 MobiDBLite consensus disorder prediction 112 127 - -
Gso2g2340 496 MobiDBLite consensus disorder prediction 1 127 - -
Gso2g2340 496 Gene3D - 44 252 IPR012677 -
Gso2g2340 496 Coils Coil 57 86 - -
Gso2g2340 496 MobiDBLite consensus disorder prediction 343 400 - -
Gso2g2340 496 MobiDBLite consensus disorder prediction 352 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2340 Gso-Chr2 47977563 47980307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2340 263 346 C2H2 Transcription Factor Family AT2G19380 29.762 6.33e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2340 K12741 - gmx:100792637 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0346 14 3123111 3127520 Gso2g2340 2 47977563 47980307 GST