Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2335 ATGGCTTCTTCGGGGCCAAATGGAACTGACAACGGGGATTCGTTGCCTCCCCCGCCTCCTGTTGTCCCATCAGATGTTGTACCTGTCAAAGCTGAGCTGGAGAAGAAGAAGGCTTTGCGGCTTCCAATAGCCAGGCGTGGCCTTGCTTCAAAAGGGACAAAGCTGCAACTTCTCACCAATCACTACAGGGTGAACGTTGCAAATACTGACGGGCATTTTTATCAGTATAGTGTTGCTCTTTTTTATGATGATGGACGACCTGTGGAGGGTAAGGGTGTAGGGAGGAAGCTTCTGGACAGGGTGCATGAGACGTATGATTCTGAATTGAATGGGAAGGATTTTGCATATGATGGTGAGAAGACTCTGTTTACTCTTGGGTCTCTTGCTCGCAACAAGCTTGAGTTTACGGTCGTTTTGGAGGATATTATTGCTTCCAGAAACAATGGAAACTGCAGCCCAGATGGCAATGGAGAACTGAATGAGAGTGACAAAAAGAGGATGAGGCGCCCTAATAGATCCAAGGCATTTAAAGTTGAGCTTAGCTATGCTTCAAAGATTCCATTGCAGGCCATTGCCAATGCTCTACGTGGACAGGAATCCGAGAATTATCAAGAAGCTATAAGAGTGCTTGATATCATTTTGAGGCAACATGCTGCTAAGCAAGGCTGTTTGCTTGTGAGGCAATCGTTCTTCCACAATGATCCCAAGAATTTTGCTGATGTAGGAGGAGGTGTACTTGGATGCAGGGGTTTCCATTCTAGCTTTAGAACTACACAAAGTGGACTGTCTTTGAACATAGATGTCTCAACCACGATGATAATTACCCCTGGGCCTGTGGTGGACTTCCTAATATCCAATCAAAATGTGAGAGACCCCTTTTCACTTGACTGGGCCAAGGCCAAGAGGACATTAAAAAATCTGAGGATTAAAGCGAGCCCATCTAATCAAGAATTCAAAATAACTGGGATTAGTGAACTCCCTTGCAAAGATCAAACGTTTACCTTGAAGAGAAAAGGTGGTGATGATGTTGCTGAGGAAGAAGTGACAGTATATGATTATTTTGTTAATATCCGCAAGATAGATCTTCGATATTCTGGGGATCTCCCATGTATTAACGTTGGAAAGCCAAAAAGGCCAACTTATATCCCTCTTGAGCTTTGCTCTTTGGTATCCCTGCAACGTTATACAAAAGCACTATCCACTCTTCAAAGGGCTTCATTGGTGGAGAAGTCCAGGCAGAAGCCACAGGAGAGGATGAGGGTTTTGACTGATGCACTTAAAAGTAGCAATTATGGTTCCGAACCAATGCTACGTAATTGTGGGATCTCTATAAGCCCCAACTTTACTGAAGTTGAGGGTCGGGTTTTACAAGCTCCGCGGTTAAAATTTGGTAATGGGGAAGACTTCAATCCTAGAAATGGGAGGTGGAACTTCAATAACAAGAAAATTGTCAAGCCAACTAAAATAGAAAGATGGGCTGTGGTTAACTTCTCTGCACGCTGTGATACACGAGGGCTTGTGAGGGATCTCATTAAGTGTGGTGGAATGAAAGGAATTGTGATAGATCAGCCATTTGATGTGTTTGAAGAAAATGGTCAGTTTAGGCGTGCACCGCCTGTGGTTCGAGTAGAGAAGATGTTTGAATTGGTTCAGTCTAAACTTCCTGGGGCTCCTCAGTTTCTTCTTTGTCTGCTTCCTGAGAGGAAAAATTCTGATCTTTATGGTCCATGGAAGAAGAAGAATCTTGCTGAGTTTGGAATCGTGACTCAGTGTATAGCTCCGACCAGGGTCAATGACCAATATTTGACTAATGTTCTGTTGAAAATCAATGCTAAGCTTGGTGGCCTGAACTCAATACTAGGTGTTGAGCATTCTCCTTCTATTCCTATTGTTTCTAGAGCACCAACCATTATTATTGGCATGGATGTGTCTCATGGTTCGCCAGGGCAAACAGATATTCCTTCAATTGCCGCGGTGGTCAGCTCCCGAGAATGGCCACTAATATCAAAGTATAGGGCTAGCGTCCGTACCCAGTCTCCAAAGATGGAAATGATTGATAATTTGTTCAAGAAGGTTTCTGACAAGGAGGATGAAGGCATAATGAGGGAGCTTCTACTTGATTTCTATACAAGTTCTGGGAATAGAAAGCCCGATAATATAATCATATTCAGGGACGGTGTTAGTGAGTCCCAGTTCAATCAAGTTTTGAACATTGAACTTGATCAAATTATCGAGGCTTGCAAGTTTTTAGATGAAAAGTGGAACCCCAAGTTTTTGGTGATTGTTGCTCAAAAGAACCATCATACTAAATTCTTTCAACCTGGAGCTCCTGACAATGTTCCTCCTGGAACTGTAATTGATAACAAAATTTGCCATCCTCGGAATTATGATTTCTATATGTGTGCACATGCTGGAATGATTGGTACTAGCAGGCCCACACACTACCATGTTCTGTTAGACGAGATTGGCTTTTCACCTGATGATCTACAAGAGCTTGTACATTCATTATCATATGTGTATCAGAGGAGCACCACTGCCATTTCTGTCGTTGCTCCAATTTGCTATGCTCATCTGGCTGCTACTCAGATGGGTCAGTTTATGAAATTTGAAGACAAATCTGAGACATCTTCGAGTCATGGTGGTTCTGGTATGCCTGCTCCTCCCGTCCCTCAGTTGCCAAGATTGCAGGAAAATGTTTCGAGCTCAATGTTCTTTTGTTGA 2721 0.4322 MASSGPNGTDNGDSLPPPPPVVPSDVVPVKAELEKKKALRLPIARRGLASKGTKLQLLTNHYRVNVANTDGHFYQYSVALFYDDGRPVEGKGVGRKLLDRVHETYDSELNGKDFAYDGEKTLFTLGSLARNKLEFTVVLEDIIASRNNGNCSPDGNGELNESDKKRMRRPNRSKAFKVELSYASKIPLQAIANALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFSLDWAKAKRTLKNLRIKASPSNQEFKITGISELPCKDQTFTLKRKGGDDVAEEEVTVYDYFVNIRKIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLTDALKSSNYGSEPMLRNCGISISPNFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVKPTKIERWAVVNFSARCDTRGLVRDLIKCGGMKGIVIDQPFDVFEENGQFRRAPPVVRVEKMFELVQSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSILGVEHSPSIPIVSRAPTIIIGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRASVRTQSPKMEMIDNLFKKVSDKEDEGIMRELLLDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGAPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGSGMPAPPVPQLPRLQENVSSSMFFC* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2335 906 Pfam Argonaute linker 1 domain 226 274 IPR014811 -
Gso2g2335 906 CDD PAZ_argonaute_like 276 390 - -
Gso2g2335 906 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Gso2g2335 906 Pfam PAZ domain 280 407 IPR003100 GO:0005515
Gso2g2335 906 SMART DUF1785_2 224 276 IPR014811 -
Gso2g2335 906 Gene3D paz domain 270 395 - -
Gso2g2335 906 SUPERFAMILY Ribonuclease H-like 544 866 IPR012337 -
Gso2g2335 906 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 905 - -
Gso2g2335 906 SUPERFAMILY PAZ domain 271 431 IPR036085 GO:0005515
Gso2g2335 906 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 11 905 - -
Gso2g2335 906 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Gso2g2335 906 MobiDBLite consensus disorder prediction 1 23 - -
Gso2g2335 906 MobiDBLite consensus disorder prediction 870 893 - -
Gso2g2335 906 Gene3D - 627 906 IPR036397 GO:0003676
Gso2g2335 906 MobiDBLite consensus disorder prediction 150 171 - -
Gso2g2335 906 Pfam N-terminal domain of argonaute 54 214 IPR032474 -
Gso2g2335 906 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Gso2g2335 906 Gene3D - 455 621 - -
Gso2g2335 906 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Gso2g2335 906 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Gso2g2335 906 CDD Piwi_ago-like 435 862 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2335 Gso-Chr2 47941288 47949471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2335 37 906 Eukaryotic Initiation Factors Gene Family AT1G48410 34.778 2.38e-159 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2335 K11593 - gmx:100792105 1793.86