Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2270 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTGGTGACAACATTGAAGAAGCAATTCGACATTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCCGATCGACCCGGTGAACCTGAGTGCTTATATTATTTGAGAACTGGAATGTGTGGTTATGGAACTAACTGTCGATACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCTGTGTCATTCAATACTTTAGGCCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCCTTGGAGCATACCCATTGGCTGGATCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTACCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGACTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCGCAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGTCACTCTTTGGTGGGCAGGCAATAAATTCTGCTCTCCCAAATAGGCCTGATCAACCAGAATGCAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATGTCTCAATCATTGATAAATCCACTCGGCCTTCCTGTGCGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTACGGAATGTGTAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTAAGTGACAAGAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATTGAATTCCTTCCCGGCTTCCGCAGAGCCTTTACACAACTAA 1248 0.4359 MPENRQVLRNADSGDNIEEAIRHLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTGMCGYGTNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLSSSQGVIPVQSWNNYMGNMNPAMPNGFLGSNLVYDYMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERMSQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMNVLDTPLTRGLSNVQPPETSPSKLSDKKLQHSDAKAATEDSSKQDDTTLNSFPASAEPLHN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2270 415 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Gso2g2270 415 Gene3D - 83 164 - -
Gso2g2270 415 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Gso2g2270 415 MobiDBLite consensus disorder prediction 361 377 - -
Gso2g2270 415 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 10 398 - -
Gso2g2270 415 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Gso2g2270 415 SUPERFAMILY CCCH zinc finger 49 71 IPR036855 GO:0046872
Gso2g2270 415 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Gso2g2270 415 ProSiteProfiles Zinc finger C3H1-type profile. 86 114 IPR000571 GO:0046872
Gso2g2270 415 SUPERFAMILY CCCH zinc finger 311 339 IPR036855 GO:0046872
Gso2g2270 415 SUPERFAMILY CCCH zinc finger 130 159 IPR036855 GO:0046872
Gso2g2270 415 PANTHER PROTEIN PHOSPHATASE RELATED 10 398 - -
Gso2g2270 415 MobiDBLite consensus disorder prediction 361 415 - -
Gso2g2270 415 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Gso2g2270 415 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Gso2g2270 415 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Gso2g2270 415 SMART c3hfinal6 86 113 IPR000571 GO:0046872
Gso2g2270 415 SMART c3hfinal6 133 158 IPR000571 GO:0046872
Gso2g2270 415 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Gso2g2270 415 Gene3D - 264 343 - -
Gso2g2270 415 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Gso2g2270 415 MobiDBLite consensus disorder prediction 378 396 - -
Gso2g2270 415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 158 IPR000571 GO:0046872
Gso2g2270 415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 70 IPR000571 GO:0046872
Gso2g2270 415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Gso2g2270 415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Gso2g2270 415 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Gso2g2270 415 Gene3D - 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2270 Gso-Chr2 47329838 47334988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2270 8 410 C3H Transcription Factor Family AT1G04990 47.101 7.35e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g2270 zf-CCCH 4.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2270 - - gmx:100812856 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0423 14 4036840 4041470 Gso2g2270 2 47329838 47334988 GST