Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2268 ATGGAAAACTCAGACAACGACGAACCCGAAAAGAAGAGGCCTCATCTCACGTTTGTTTCTTCCCGCACGCCTCGAAACTCCATCAACACTCCTGCCACCAACAAAACCGCTGACCCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCCTATGACGACTTGTTAATTGCATTGAACCAACTATGGACTCAGTTGGTTGACGATATGATTCTTCTTGGAATACGAGCTGGGAGAGGGAAAGGCAAAGACACATTGCAACATTTGACTGACATTGATAATCCTCAAGGTTCACTTCCTTTGTGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGAATTAGTGATGACGAGATCATTAGTTGTGTTAAGGAAGCCCTTGCTTTGCGTCAGTCATCTACAAGGGAGCTGTTGAAACTCTTAAAAGATACCATTGATTATCAGATGGAAAGAGCAGGCAGTATAGCTCAGGTTTTACATGAAGATTTATCTTCTGAAGATGCTAAAATCCAAATGTCTAAGATTGATGATATGACGAAAGAGGAGGCAGATAATTTCCGTGAAGTGGTTGATACTCTCCATGCAAAACATAAAGAGTATACTGTTGCTATTCAAAATTCTATCAATGAGTGCTCACAAGATCAATCTGAGATTAAACGCCTTGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATGCAGCAATAGGAATGAATTCCCCCAATGCAGATGCAGTGAATGGAAACCTGTCTCCTGAAAACATTGCTGACAGAACTATGGGTTTGCGTGAATTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGAGGCTGATCGTCTTTCTGAGCTTCAAGATGCACAAGAAGACAATCAGACCTTGACAAAGCAGTTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTATGTATGCACTTCTCGAATATACTCTTTGGCTAATGATCAACTTCAACATTGGATGACTGAATTGACCCGATATAAAACATCAGTAGAATCTCTGCAGGCTGGCAATGTTCATGTTGCAAAATGGGAGAATGAACTAAATTTGAAATTGGAGTCTGCTGATAGTGCAAGACAGATCCTTGGCAATTCTGACCATAGGATTGATGACCTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGGAGAAAAGATATAAAATCTGAGTTTCATGTTATGGCTTCAGCTTTATCTAAAGAAATGGGAATGATGGAAGGTCAATTAAAGCGATGGAAAGACGCAGCTCATGAGGCTGTATCATTACGTGAGAAAACACATTCACTAAGAGAAGCATTGAGCATGAAGACAAGTGAACTTAAGAGCCTTACAAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATTGACTGAAAAGTTACAGAAGGAGAATCAGGAATTAGAGTTTATTCTGGATATGCATGGCCAGGAGAATTATGATAAAAGACATTCAGAAGTAAGAGAATCTGAAAGAAAAGCTCACTCTCAAGCTGAAATGCTGAAGAATGCTTTAGACGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAACGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCAGAAGCTGAAATAGAGGACTTGAGATCCAAGCTGGATGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCCGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATCGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATTAATACATCAATAGAACATTCAAAGACAAGGATTACACACAGTGAAGAGCAGATGAAAGCTATTCTATCCGATGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAAATGGGAATTGGGCGATACTGAGAAGGAATTGAAGTTGCTCAAGTCTGCTGTTTCCTCTTCAGAGAAAGAATACGATCAAATTCCGAAAGATACGGAAGCTATTCAAATGGAATTGGAGAGTGAAAGGAGTTTACGGAAGAAGCTTGAGGAAGAACTTGGAGAATTGAACAGCAAAATTGATGAGCTGACTTCTGAAACTGGAGAAACCACAATACAAAAACTCGAAAAAGAAATAAGGATTTGCAAGAACATGATCAAGTGTACTGTCTGTACTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTCCGCTTTGTAAAAATATGA 2646 0.3949 MENSDNDEPEKKRPHLTFVSSRTPRNSINTPATNKTADPGVLQFQNQQLVQQIDIQKHALHDLEEKIRELKGKQSSYDDLLIALNQLWTQLVDDMILLGIRAGRGKGKDTLQHLTDIDNPQGSLPLCPAEDIFLCRLIQKDSIKGISDDEIISCVKEALALRQSSTRELLKLLKDTIDYQMERAGSIAQVLHEDLSSEDAKIQMSKIDDMTKEEADNFREVVDTLHAKHKEYTVAIQNSINECSQDQSEIKRLAGELDEIVAELEESRRKLVNLEMQKDAAIGMNSPNADAVNGNLSPENIADRTMGLRELKDSIEEAKIVEADRLSELQDAQEDNQTLTKQFQDLQNELKDDKYVCTSRIYSLANDQLQHWMTELTRYKTSVESLQAGNVHVAKWENELNLKLESADSARQILGNSDHRIDDLELQLQKCIIEKNDLEIKMEEAKQDTGRKDIKSEFHVMASALSKEMGMMEGQLKRWKDAAHEAVSLREKTHSLREALSMKTSELKSLTNKCAEQVLEIKSLKTLTEKLQKENQELEFILDMHGQENYDKRHSEVRESERKAHSQAEMLKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRSKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKTKQAHNTLMSQKQALAKQLQQINTSIEHSKTRITHSEEQMKAILSDAIKCNQEEKHLAVTLEFAKWELGDTEKELKLLKSAVSSSEKEYDQIPKDTEAIQMELESERSLRKKLEEELGELNSKIDELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2268 881 Coils Coil 640 660 - -
Gso2g2268 881 Coils Coil 745 765 - -
Gso2g2268 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Gso2g2268 881 Coils Coil 521 544 - -
Gso2g2268 881 CDD RING-HC_BRE1_like 827 868 - -
Gso2g2268 881 SUPERFAMILY RING/U-box 828 872 - -
Gso2g2268 881 MobiDBLite consensus disorder prediction 1 38 - -
Gso2g2268 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Gso2g2268 881 Coils Coil 46 80 - -
Gso2g2268 881 Coils Coil 421 448 - -
Gso2g2268 881 SMART ring_2 829 867 IPR001841 -
Gso2g2268 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Gso2g2268 881 Coils Coil 584 625 - -
Gso2g2268 881 Coils Coil 329 349 - -
Gso2g2268 881 MobiDBLite consensus disorder prediction 19 38 - -
Gso2g2268 881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 12 881 - -
Gso2g2268 881 Coils Coil 773 807 - -
Gso2g2268 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Gso2g2268 881 Coils Coil 250 284 - -
Gso2g2268 881 PANTHER RING FINGER PROTEIN-RELATED 12 881 IPR013956 GO:0004842|GO:0010390
Gso2g2268 881 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2268 Gso-Chr2 47307509 47317216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2268 829 876 RAD5 or RAD16-like Gene Family AT5G05130 35.417 5.69e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2268 K10696 - gmx:100811776 1662.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0425 14 4054659 4064862 Gso2g2268 2 47307509 47317216 GST