Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2247 ATGACCGGTGGCCACGATCGCGTGAAGGGTTCATGGAGTCCTCAGGAGGATGCGACGTTGCTGAAACTCGTGAACGAGCACGGGGCACGCAACTGGTCCGTCATAAGCGCCGGAATTTCCGGGCGTTCCGGCAAGTCGTGCCGTCTGCGGTGGTGCAACCAGCTGAGTCCGGAGGTGCAGCACCGTCCGTTCACTCCGGCGGAGGACAAGATGATCATAAAGGCGCACGCCATTCACGGAAACAAATGGGCCACCATCTCGCGCCTCCTCCCCGGCCGCACCGACAACGCCATCAAGAACCACTGGAACTCCACTCTCCGCCGCCGTCGCGCGGTGGAGTCATCCTCCTCCTCATCGGCGTCTCCGCCGGCGAAACGTCACTCTTCCTTGTTTGACACGCTTCACCCTTTCAAGAAACAGTGCATCGAGAAGGAAAACGAAGAAGAGCGAGTGCTGAGTCCCGTTACGACGTCGTTGAGTCTTTTCCCTCCTGGGGAAAAATCAGAGGAAGAAGAGGAAGAGGAAGAACAAGAAGAAGAAGAAAAGGAGAAAGAAGAGTTGTTTCAAGTGAATGTTAATGTTAATCAGAAGGTTACGGATCAGAATTACTTCATGCAGATGATGCAGCGGATGATAGCGGAAGAAGTTAGGAATTACATGGAGACTTTGCGAAATTGCCAAAGGAACAACGGTCTCTCCCTTGAGCCTGGGTTAGATCTTCTTCCTCCGACGCTTCCAAAGTAA 744 0.5376 MTGGHDRVKGSWSPQEDATLLKLVNEHGARNWSVISAGISGRSGKSCRLRWCNQLSPEVQHRPFTPAEDKMIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRAVESSSSSSASPPAKRHSSLFDTLHPFKKQCIEKENEEERVLSPVTTSLSLFPPGEKSEEEEEEEEQEEEEKEKEELFQVNVNVNQKVTDQNYFMQMMQRMIAEEVRNYMETLRNCQRNNGLSLEPGLDLLPPTLPK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2247 247 Coils Coil 165 197 - -
Gso2g2247 247 SMART sant 8 57 IPR001005 -
Gso2g2247 247 SMART sant 60 108 IPR001005 -
Gso2g2247 247 CDD SANT 11 53 IPR001005 -
Gso2g2247 247 Pfam Myb-like DNA-binding domain 63 105 IPR001005 -
Gso2g2247 247 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Gso2g2247 247 MobiDBLite consensus disorder prediction 109 126 - -
Gso2g2247 247 MobiDBLite consensus disorder prediction 167 183 - -
Gso2g2247 247 ProSiteProfiles Myb-like domain profile. 4 55 IPR001005 -
Gso2g2247 247 Gene3D - 8 60 - -
Gso2g2247 247 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Gso2g2247 247 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gso2g2247 247 MobiDBLite consensus disorder prediction 108 130 - -
Gso2g2247 247 PANTHER MYB PROTEIN-RELATED 4 226 - -
Gso2g2247 247 CDD SANT 63 106 IPR001005 -
Gso2g2247 247 MobiDBLite consensus disorder prediction 145 185 - -
Gso2g2247 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 55 IPR017930 -
Gso2g2247 247 Gene3D - 62 131 - -
Gso2g2247 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gso2g2247 247 PANTHER OS01G0850400 PROTEIN 4 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2247 Gso-Chr2 47147411 47149005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2247 6 116 MYB Transcription Factor Family AT4G37260 71.171 1.63e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g2247 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2247 - - gmx:778069 470.7