Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2245 ATGGCCTCTCTCCTTCCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACAGAAACCACTCCCAGCGAAACATCTATCACTGCTAGTGCCAACAAAAGCAGCAGCAGCAACAACAACAATAGTAGTAGCAATAGTCGTAAGTGCAAAGGTAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGTACGCGCAAGTGGCTCGGAACATTTGCCACCGCCGAGGACGCCGCCAGAGCTTACGACCGCGCCGCCATCATCCTCTACGGTTCGAGAGCACAGCTCAACCTACAACCCTCCGGTTCCTCTTCTCAATCTTCCTCTTCTCGCTCCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCTTCTGGTTTTACTTTCAATTTTCCCTTCAACTCCGCCCCCGCCACCACCGTGCCTTACCCTTATAACAATAGTCACAATTACACTTACACCCCACCCGTGTTGTACCCTATTGATAATAGTAAGAATCACAATATTAATACAGTGCAAGTTCATCATCCACATCACTATCGTTGTCCTGAGGAAGTGGTGCAAGTGCCACATTCGGAATCTGATTTGGGGGGTTTAGGTGGGAATAATAATATTGTTGTTGATGGTTCTATTAGATCAACCTCGTACCAGCGGCATGGTTTTCTGGATAATATTAATAATAACAATAACCATGTGCATGTGCAAGTGCAACATGGGGTTTTTTCGAATCAACAGCAGCAACATCAGAATAGCGTGGTGGAGGGAGTGAATTCCTCCGTCGTGGGTTCGGTTTCGTCTTCCATGGATGCTTCTTCGGTGGATCCGGATCTGGCGTTGGTGGGGACAATGGGGCTTGGATCTTCTTCGCCTTTTTGGTCCATGGCGAACGAGGATGATTACACTGGTAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 1017 0.4907 MASLLPQPQETKPTATTATETTPSETSITASANKSSSSNNNNSSSNSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSGSSSQSSSSRSSSSSTQTLRPLLPRPSGFTFNFPFNSAPATTVPYPYNNSHNYTYTPPVLYPIDNSKNHNINTVQVHHPHHYRCPEEVVQVPHSESDLGGLGGNNNIVVDGSIRSTSYQRHGFLDNINNNNNHVHVQVQHGVFSNQQQQHQNSVVEGVNSSVVGSVSSSMDASSVDPDLALVGTMGLGSSSPFWSMANEDDYTGSLWDYNDPFFFDL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2245 338 Coils Coil 338 338 - -
Gso2g2245 338 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Gso2g2245 338 MobiDBLite consensus disorder prediction 1 52 - -
Gso2g2245 338 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Gso2g2245 338 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 336 - -
Gso2g2245 338 SUPERFAMILY DNA-binding domain 62 119 IPR016177 GO:0003677
Gso2g2245 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 9 336 - -
Gso2g2245 338 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Gso2g2245 338 MobiDBLite consensus disorder prediction 117 142 - -
Gso2g2245 338 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Gso2g2245 338 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Gso2g2245 338 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gso2g2245 338 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Gso2g2245 338 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2245 Gso-Chr2 47126630 47128101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2245 48 338 AP2-EREBP Transcription Factor Family AT2G40220 42.405 9.51e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g2245 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2245 K09286 - gmx:100301892 516.153