Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2242 ATGAATAATGTTCTATCCGCGATGATGGTCTCCCCAGGCTTGTTACCATCAGGGACTTTGCTAGATTCTCTGATTCATGTGTGCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTGGTACACACAAGAAACGTTTCAACCATGATAAGGAGGATCAAACTTCTCTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTCCCTCCTTCCTCGATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGTCAAAGTTTTGATCCAAGATTGCAAGGATGGAAGTTCTCTTTGGAGTCTCATACAGTTAGAGTTCATATCCAACCAATTTTATGTGCTTGTTAAGGAGATGGGAAGGGCCCTTGATATCCTTTCCTTGAGTTTGCTTAATGTAACCTCAGATATTAAGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCACCGAAGAGAACAGCTTATACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAAGAAGGGGCTCGTTGACTTTGGCAAAGTGGAAGAGATATTAAGTAGCATTGGTTTGAGAACTCCATCAGATTATGAAGAGGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGATTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGATGTGCTATTCCAAATCCATGATATTCAAAGAAGGAGAGAGTGATACAAAAGAAGATTGTAAGCCACTATCTTCATTTTTGTATAACAAAGTATATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATTTCACTTGACTTAATGAGGGACCCGGTGATTGTGTCATCAGGGCACTCTTATGATAGAATCTCAATTGCACAATGGATAAACTCTGGTCATCACACATGCCCCAAAAGTGGGCAAAGGCTAATTCACACGGCTCTCATACCAAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGACAACAATGTTCCAGTGGATGAGCCTACCACCGAAGGAAACAAGAACAGCAGCAAGAAGTTGAAGGAAGATGCTGTAGACCATATTTCTGCAAACAAAGCCGCTGCGGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTGGCAACTGGTTCTGCTGACATCCAAAGGCAAGCTGCATATGAGCTTCGGTTACTCACAAAAACTGGCATGGTTAACCGAAGCGTCATAGCCGAGGTAGGGGCTATTCCCTTTCTTGTAACACTCCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAGCCTTGTTCAACCTCTCCATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGACAGCATAGTGGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGTTTGTCTATGGTGGATGAGTGCAAAGTGCAAATTGGAGGAAGGCCAAGGGCAATACCTGCCTTAGTCGAACTCTTGAAAGAAGGAACTCCAATAGGGAAAAGAGATGCTGCAAGTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAGGTAAGTGTTGTTAAGGCTGAGGCAGTTCCTGTGCTGGTTGAGTTGCTTATGGATGACAAGGCTGGCATAACAGATGATGCTCTTGCTGTTCTTGCTTTGCTCCTAGGTTGCTCTGAGGGGCTAGAAGAGATAAGGAACAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGATCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAACAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGGAGCATTCCTTCACTGCAAAGCTTGGCTGCTGATGGGTCTTTGAGAGCTAGGAGAAAGGCAGATGCAGTGCTTAGGTTTCTCAATAGGTGCTGCTCTCAGCCTCATCATTGTGTTTAG 2049 0.4324 MNNVLSAMMVSPGLLPSGTLLDSLIHVCNEVGSMEKFPLVHTRNVSTMIRRIKLLSSLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILSLSLLNVTSDIKEQVELLHKQAKRAELLIDPRELHRREQLIQVMANNSLQNKKKKGLVDFGKVEEILSSIGLRTPSDYEEEISKLEAEAQNQAGTGGLIVVSNINNLISLMCYSKSMIFKEGESDTKEDCKPLSSFLYNKVYDSSSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHSYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVDEPTTEGNKNSSKKLKEDAVDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLTKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDECKVQIGGRPRAIPALVELLKEGTPIGKRDAASALFNLAVYNPNKVSVVKAEAVPVLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKQEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADAVLRFLNRCCSQPHHCV* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2242 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 357 IPR013083 -
Gso2g2242 682 Gene3D - 365 510 IPR011989 -
Gso2g2242 682 CDD RING-Ubox_PUB 286 328 IPR045210 -
Gso2g2242 682 SUPERFAMILY RING/U-box 269 356 - -
Gso2g2242 682 PANTHER U BOX DOMAIN-CONTAINING 17 680 - -
Gso2g2242 682 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 680 - -
Gso2g2242 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Gso2g2242 682 Pfam U-box domain 282 352 IPR003613 GO:0004842|GO:0016567
Gso2g2242 682 Pfam Armadillo/beta-catenin-like repeat 425 461 IPR000225 GO:0005515
Gso2g2242 682 SUPERFAMILY ARM repeat 394 671 IPR016024 -
Gso2g2242 682 Gene3D - 21 133 IPR036537 GO:0007166
Gso2g2242 682 SMART arm_5 547 587 IPR000225 GO:0005515
Gso2g2242 682 SMART arm_5 463 504 IPR000225 GO:0005515
Gso2g2242 682 SMART arm_5 422 462 IPR000225 GO:0005515
Gso2g2242 682 SMART arm_5 508 546 IPR000225 GO:0005515
Gso2g2242 682 SMART arm_5 588 629 IPR000225 GO:0005515
Gso2g2242 682 Gene3D - 511 671 IPR011989 -
Gso2g2242 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Gso2g2242 682 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Gso2g2242 682 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2242 Gso-Chr2 47091155 47093478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2242 23 677 U-box Gene Family AT3G46510 37.994 1.91e-125 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2242 - - gmx:100793498 1311.59