Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2239 ATGGCCAAGAACAGGAAACTCACTCGGTTCAAGGATCTTTCTATAGCTTTTCGCTTTGTGGCAGTTTTTTTCTTGCTTCAGAAATTGGGGTTGTGTTGTTCTTTAAATGAAGAAGGTAATGCTCTTTTGAAGTTGAGGCAGCGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGATAGATGATGAAGTATCTGTTGACCCTTGTAATTGGTTTGGAGTTGAGTGCTCAGATGGAAGAGTTGTTGTGGCCTTGAATTTGAAGGATCTCTGCCTTGGAGGAACTCTGGGGCCTGAGCTTGTGAAACTTGTCAACATAAAATCTATTATTTTGCGGAATAACTCTTTTTCTGGGATCATCCCTGAAGGATTTGTAGAATTGGAAGAATTGGAGGTTTTGGATTTGGGATACAACTACTTCAGTGGACATCTACCAGCTGATCTTAGGAGTGATATCTCACTAGCAATTCTTTTGCTGGATAACAATGATTTTCTTGTTGGTTTCTCTCCCGAAATAAATGAACTGAGGATGCTTTCTGAATGTCAAGTAGATGAAAATAAGTTAACTAATGCTGCTAAAATGCCAGCTTGTACAAAAAGAGTCACCACATGGAATATCGATCAAGGTAAAAGTACTCGTGGCCTACTACAACAAAAGGCTAAACCCCGTACTAATCAAGGCCATTTTTATCGTGTGGCTGATCCACCTGTCAAGAGCTCTCCTCCTCCTCCCTCTGCTTCCCCATCAGCCTCAGCAAAACCACCAGGGCCAAAGTTAGCTCCTCATAGGAAAAATGGTTCTGATTCTCCTCCTCCCCACTCTACACCAGGTTCTGGAACATTATCTAAAACTGAAAGCAACTCACCAAAGGTTCATACATTTCCTATTTTGCCCGGAGTCATAGGTGGTGCTGTGTTTCTTATTTTTTCAAGCATTGGCATATATCTTTGTAAAACAAAGGTAGCTAATGTCAGACCTTGGGCCACGGGACTAAGTGGACAGCTTCAGAAGGCATTTGTAACTGGTGCGCAAAAGCTAAGGAGATCAGATCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTACTTCACCCATCGGTACACTGTACAAAGGAACTTTGTCTAGTGGCGTTGAAATAGCTGTAGCTTTTGTTCCGGTAACATCATCCAGGAATTGGTCAAAGACTTTAGAAGCTCAATTTAGAAGCAAGATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACATAAAAGAGGCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCAACGGGTATGGCTTATTGCCTGCAACATATGCACCAGTTGGACCCTCCTATGACCCTTATCAAGCTGAATTCTTCAGCCGTTTACCTCACCAATGACTACGCTGCCAAGCTTTCAGATTTAAGTTTCTCCAATGACATAACCTCAGCTGAGGCAAGAGCCATTGACATGCCAATAGCAACTCCAGAAAGTAATGTTTATAGCTTTGGTGTTCTACTATTTGAAATGGTCACGGGTCGTCTTCCTTATTCAGTGGAACATAGGGACTCACTTGAAAACTGGGCATCACACTATTTAGAAGGGGACCAGCCCCTCATAGAAATGGTGGATCCAATTCTAGTGTCTTACCAAGAGGATCAGCTGGAACAAGTTGCTGCATTGATTACATCTTGTGTCCACCCTGATCCACAGCAGAGACCAACAATGAAAGATGTGAGTGAGAGACTCAGAGAGATAACAAAAATAACACCTGAATCAGCAGTTCCAAAACTTTCTCCTCTTTGGTGGGCAGAACTTGAGATTGCTTCTGCAGAAGCACGCTGA 1938 0.4205 MAKNRKLTRFKDLSIAFRFVAVFFLLQKLGLCCSLNEEGNALLKLRQRIVSDPFGALSNWIDDEVSVDPCNWFGVECSDGRVVVALNLKDLCLGGTLGPELVKLVNIKSIILRNNSFSGIIPEGFVELEELEVLDLGYNYFSGHLPADLRSDISLAILLLDNNDFLVGFSPEINELRMLSECQVDENKLTNAAKMPACTKRVTTWNIDQGKSTRGLLQQKAKPRTNQGHFYRVADPPVKSSPPPPSASPSASAKPPGPKLAPHRKNGSDSPPPHSTPGSGTLSKTESNSPKVHTFPILPGVIGGAVFLIFSSIGIYLCKTKVANVRPWATGLSGQLQKAFVTGAQKLRRSDLEAACEDFSNVIGTSPIGTLYKGTLSSGVEIAVAFVPVTSSRNWSKTLEAQFRSKIDTLSKVNHKNFVNLIGYCEEEDPFTRVLVFEYAPNGTLFEHLHIKEAEHLDWGTRLRVATGMAYCLQHMHQLDPPMTLIKLNSSAVYLTNDYAAKLSDLSFSNDITSAEARAIDMPIATPESNVYSFGVLLFEMVTGRLPYSVEHRDSLENWASHYLEGDQPLIEMVDPILVSYQEDQLEQVAALITSCVHPDPQQRPTMKDVSERLREITKITPESAVPKLSPLWWAELEIASAEAR* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2239 645 MobiDBLite consensus disorder prediction 269 290 - -
Gso2g2239 645 PANTHER LRR RECEPTOR-LIKE KINASE 1 642 - -
Gso2g2239 645 PANTHER PROTEIN MALE DISCOVERER 2 1 642 - -
Gso2g2239 645 SUPERFAMILY Protein kinase-like (PK-like) 344 614 IPR011009 -
Gso2g2239 645 SUPERFAMILY L domain-like 41 192 - -
Gso2g2239 645 Gene3D Phosphorylase Kinase; domain 1 330 439 - -
Gso2g2239 645 MobiDBLite consensus disorder prediction 210 290 - -
Gso2g2239 645 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Gso2g2239 645 ProSiteProfiles Protein kinase domain profile. 357 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2239 645 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Gso2g2239 645 Gene3D Ribonuclease Inhibitor 33 224 IPR032675 -
Gso2g2239 645 Pfam Protein tyrosine and serine/threonine kinase 360 614 IPR001245 GO:0004672|GO:0006468
Gso2g2239 645 Gene3D Transferase(Phosphotransferase) domain 1 440 626 - -
Gso2g2239 645 MobiDBLite consensus disorder prediction 210 225 - -
Gso2g2239 645 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2239 Gso-Chr2 47072789 47076928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2239 21 614 Receptor kinase-like Gene Family AT5G16000 25.791 7.30e-47 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gso2g2239 PK_Tyr_Ser-Thr 4.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2239 - - gmx:100792450 1244.95