Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2225 ATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGCATCCATTCAGTCCTCACCCATTTGAAGCAGTTGCATTTGGCTCATGGCAAGCTGTGGAGTTCATAAAAATTGAGGCAGGAACTATGTCCATGCATTTTGCAGATAATCATCATGTGGTTATGGAGAAAGGACCCTTGTCAGATATTCGAATAAGGTCAAGGAAAGCTACTTTACCTGATTGCTCGCGTTTTCTTCGTCCTGGAATTGACGTATGTGTACTATCTGCCCCTCAACAATCTGATGATGCAGATGCAGGAATTAATCTCGACCCTGTTTGGACTGATGCCAAAATAAGCTCTGTACAAAGAAAACCTCATGACTCAGAGTGCTCGTGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCACTCGGTGCAGAGCTAAGAACTCTTAATAAGGAGATCAAAGTAGTTGGAATCAATCAAATATCCATCCTCCAAAAACTTGAAAGTACTCCTTGTGAAAATCAGCACTACCGGTGGGCATCATCCGAGGACTGTTCCATTATATCACACACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACCACAGCTTTAAAGAAGAAGGTTTCATTCTGCGTAAGATCTCTAGAAGACAAGCTGGTGTATCAAGTTTTGGAAAGGGATACTACTGTTAGCACTTCATTGAACAATGAGTCTCACATTGATGTTGTGAATTTCAAAACAGAAAAAGGCACGTTATTTTCCATTGTTTCTCAAGTAGCTACACTTAAAACTAAGAGGGTTGAACCTGAACAGGAATCCCATGAAGATAAAGAATCACCATCTTACAATGTTGAGGGCTTACGGCGTTCCAAGCGTCGGAATGTACAGCCTGAGCGTTACCTTGGCTGTGAAAAAGTTTCCCAGATTGATGTTGGTTCTTTCAGAAACTTACCACCAGTTAAGATAAACACTTGGAAAGATGATGATGTTGATCATGAAATGAATATACCATTAGCTGGCCTGTTTAGTTTGCAGAAGAAGTTTTTAGAAGGGGATACTGACAATCATCAAAAGGTCAAGAAGGCGAGCTCGTGCCGGGAGCTTGTGGTGTACCAAAGGAAGAAGACTAAATCCCAGAAAGTAAAGTCAGGAGGTGATGATCAGAATGAACATCAAAATCATCTTGCTATTATTGCTCTTCCTGCTCAACATGATCCGGTAGAAGTTATACATTGTGATGATCTAAATGACAAGGTTACTAGAAGTTATGGTCATGAATCCTCTGAAGTTTCTTCCAAGTATCGTCATCTAATCGGTACCACTTCAAAGAAGAACGATATTAAATTGTTAACTTTTGAGTCTCATAATCATGCTGCAAAGTCAGATGATGCAGACAAGATTGATGATTTGTCATCGAGATATCATTATAGTTATGGCACCCCTAAGTCACAGAGGATGGGTTTAAGTGATCTGGATGATATGGTGGATCTTGGAAATAAATGGGAAGGGATTAGTTCCAGTAAAGGATTTCAAGGGAAAAAACAGCGTACGACATATTTAAGAAGTAGAGATCATGGAGAACAAAAAAGATACAATTATAAAGACAGATCCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCGTACTTGAAGAATATGAATACAAGACCAACCAATGAAGAATCAGCTATTGCTGACCAATGGAAGCAAAGCGAAACACCAAGCAACATTGGGCAAAAGACGGAAACTCAGATGCTTGATGAAGAGGATGCAGAAGAAGAATCTGAAATGGATATGCTGTGGAGAGAACTGGAAGTGTCATTGGCATCATGTTATCTAGAAGAAGAGACAGAGGATTCACATGCTGCTGTTTTCACCGAGACTCTGGAAAATCCGAACCCAGGTTGTCCTCATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACTGAGATCAAATATATTACACCACCCTTTATTCAACATTCAGTGCGACACCAAGAGGAGAAGCAGAGCCCTGAAGAAGATTCGAAGACCAAGCCTGATGAGGACGATGACATAGATCTTTTGCCAGCTCTAGACTCTCCTGAGAAACTTGTATCTCAAGAAAATGAAAACGTTTGGGCGTTAATTCCCGAACTTAAAGCAAAGTTGCATGCCCACCAGAAGAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGACCCGGAATTGATGGAAACTGCATCCAAAAGAAGAGGTGGCTGTGTGATATCCCATACTCCTGGAGCAGGAAAAACTTTTCTCATTATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCACTAGTCCTTGCTCCAAAGACAACACTCTATACTTGGTACAAGGAATTTATCAAGTGGGATATTCCTATACCAGTTTATCTGATTCATGGTCGTAGAACCTACCGTGTATTCAAGCAGAAATCGTCGATTGTTATTCCTGGAGTTCCTAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCACCCGAGTGTTCTTATCATGGGTTATACTTCCTTTTTAACATTGATGCGAGAGGATTCGAAGTTTGCACACAGGAAATATATGGCTAAGGTATTGAGGGAAAGCCCCGGGATCATGGTGCTGGATGAAGGGCACAATCCTAGAAGCACCAAATCTAGGTTGAGAAAAGTTTTAATGAAAGTGCAGACAGAACTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGCGAGTACTTCAACACTTTGTGCTTGGCAAGGCCAAAGTTTATTCATGAAGTACTGAAAGCATTGGACTCCAAATACAAGAGGAAAGGGAAAGTTGCAAAAAAAGCGAGTCATTTATTAGAGTCGCGGGCTAGAAAGTTCTTCTTAGACCAAATTGCCAAGAAAATTGACTCGAATAATGGTAGGGAGAGGCGGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTGTATGAAGGTAGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTACTGATGAATTCAACTGATACACAGCATGAGATTTTGCATGAACTGCACAAGAAAATGGCCAGAGTCAATGGATACCCTCTGGAGTTAGAGCTTTTGATAACTCTAGGTTCAATACATCCTTGGTTGGTGAAATCAGCAGTATGTGCTGAGAAATTTTTCACTCCTGCGCAATTGATGGAGCTAGAAAAATGCAAGTTTGATCTGAGAATAGGGTCCAAAGTAAAATTTGTTTTGAGCCTTATCTACCGGGTTGTCAAGAAGGAGAAGGTTCTCATATTTTGCCACAACATTGCACCTGTGAAGTTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGACAAAAGGTAGGGAAGTGTTGGTGCTATCTGGGGAACTAGAGCTGTTTGAAAGGGGGAGAGTAATGGACAAGTTTGAGGAGCCTGGTGGAGTAGCAAAGATACTACTTGCTTCAATCACTGCTTGTGCTGAAGGCATTAGTTTAACAGCTGCTTCAAGAGTGATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCCATTGCCCGCGCCTTTCGCCCTGGTCAGCAGAAAGTTGTTTATGTTTATCAGCTGTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATTATATACTCAGGGAAATGGTTGCGGAGGACCGGTCTAAATCGTTCCATATGATCATGAAGAATGAAAAAACTTCTACCAACAAATAA 3933 0.4071 MAHRKRRLDQLKHPFSPHPFEAVAFGSWQAVEFIKIEAGTMSMHFADNHHVVMEKGPLSDIRIRSRKATLPDCSRFLRPGIDVCVLSAPQQSDDADAGINLDPVWTDAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLNKEIKVVGINQISILQKLESTPCENQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVTTALKKKVSFCVRSLEDKLVYQVLERDTTVSTSLNNESHIDVVNFKTEKGTLFSIVSQVATLKTKRVEPEQESHEDKESPSYNVEGLRRSKRRNVQPERYLGCEKVSQIDVGSFRNLPPVKINTWKDDDVDHEMNIPLAGLFSLQKKFLEGDTDNHQKVKKASSCRELVVYQRKKTKSQKVKSGGDDQNEHQNHLAIIALPAQHDPVEVIHCDDLNDKVTRSYGHESSEVSSKYRHLIGTTSKKNDIKLLTFESHNHAAKSDDADKIDDLSSRYHYSYGTPKSQRMGLSDLDDMVDLGNKWEGISSSKGFQGKKQRTTYLRSRDHGEQKRYNYKDRSLNAAAYKDLINSYLKNMNTRPTNEESAIADQWKQSETPSNIGQKTETQMLDEEDAEEESEMDMLWRELEVSLASCYLEEETEDSHAAVFTETLENPNPGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVRHQEEKQSPEEDSKTKPDEDDDIDLLPALDSPEKLVSQENENVWALIPELKAKLHAHQKKAFEFLWQNIAGSMDPELMETASKRRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDSKYKRKGKVAKKASHLLESRARKFFLDQIAKKIDSNNGRERRQGLKMLRNVTNGFIDVYEGRSSDGLPGLQIYTLLMNSTDTQHEILHELHKKMARVNGYPLELELLITLGSIHPWLVKSAVCAEKFFTPAQLMELEKCKFDLRIGSKVKFVLSLIYRVVKKEKVLIFCHNIAPVKLFVEYFEKYFGWTKGREVLVLSGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYKRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDYILREMVAEDRSKSFHMIMKNEKTSTNK* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2225 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1116 1280 IPR001650 -
Gso2g2225 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 754 954 IPR014001 -
Gso2g2225 1310 SMART helicmild6 1140 1229 IPR001650 -
Gso2g2225 1310 MobiDBLite consensus disorder prediction 268 291 - -
Gso2g2225 1310 Pfam SNF2-related domain 729 997 IPR000330 GO:0005524|GO:0140658
Gso2g2225 1310 MobiDBLite consensus disorder prediction 674 697 - -
Gso2g2225 1310 Gene3D - 704 997 IPR038718 -
Gso2g2225 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1288 IPR027417 -
Gso2g2225 1310 Pfam Helicase conserved C-terminal domain 1112 1228 IPR001650 -
Gso2g2225 1310 CDD SF2_C_SNF 1104 1240 - -
Gso2g2225 1310 MobiDBLite consensus disorder prediction 508 531 - -
Gso2g2225 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 956 IPR027417 -
Gso2g2225 1310 CDD DEXHc_ATRX-like 729 969 - -
Gso2g2225 1310 MobiDBLite consensus disorder prediction 569 585 - -
Gso2g2225 1310 Gene3D - 1085 1304 IPR027417 -
Gso2g2225 1310 SMART ultradead3 725 959 IPR014001 -
Gso2g2225 1310 MobiDBLite consensus disorder prediction 674 702 - -
Gso2g2225 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1308 - -
Gso2g2225 1310 MobiDBLite consensus disorder prediction 569 594 - -
Gso2g2225 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1308 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2225 Gso-Chr2 46926631 46933916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2225 1141 1247 RAD5 or RAD16-like Gene Family AT5G05130 38.182 4.14e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso2g2225 SNF2_N 1.8e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2225 K10875 - gmx:100785036 2620.11