Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2224 ATGGGTGCTTATGATCAAGTTTCTCTTAAGCCATTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGGTCCAAATCTGTGGCTGAGACTATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCTGGCAAAGATGATAGTAGAACAACTCGTAAGGCGCCGGCTAAAGGTTCGAAGAAAGGGTGCATGAAAGGGAAGGGAGGACCTCAAAATTCTCAGTGTAACTACAGAGGAGTTAGGCAGAGGACATGGGGGAAATGGGTTGGTGAGATTAGGGAACCCAATAGAGGAAGCAGGCTTTGGTTGGGTACCTTCTCTTCTGCCCAGGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCTATGTATGGTCCTTGTGCACGCCTCAATTTTCCCAAAATCACAGATTATCCTTCTGTTAAGGAATCGTTGAAGGACTCTTCGATGGCTGCATCGTCGTCTTGTTCTTCGGCAGCAACTGCAGCATCTGACACTACTACTACAACATCGAACCAATCGGAGGTTTGTGCTGTTGAGGATGTTATCGAGAAACCTGCGAATGTGAATGATAAGTTTAATGATTGTCATAAGGCTTACGTATCTGCCTCACCAACTAGTAGAATGAAGCAAGAGCCTAAGGATGAGGCTGTGGACCACATGGACACAGGGGCTGGGGAAATTCAAGATGTCGGACTAGAAGGAACACATGATACTGGGCAGGTTGCAGAGAATGTAAATAAAGATCAGATGGATTTGTCATGGATTGATGGCTTTGACTTTATTGACGATTACTTGAAGAGCTTTTCCGCGGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCTTATAGATAATAACCCAATTGATAACTCTGTGTTGATGCAAGGTTTGGATTTTGGACAAATGGGTTTTCCTGGAGATGGTAATCCTCAGGTTGACGATACTCCTTCAAGCTTTATTTATCAGTTGCAAAATCCAGATGCCAAGTTGTTAGGAAGTTTGCCCCATATGGAGCAGACACCATCGGGTGTTGATTATGGATTAGATTTCTTGAAAACAGTGGAGCCAGGGGACTATAATGGTGGAGGGGAAGAACCACCATTTCTTAATTTGGATGATGATCTGAACCATGATTCAAATGGCATGCAAGCAAGGAAGGGTGGCTAG 1179 0.4419 MGAYDQVSLKPLDSSRKRKSRSRGDGSKSVAETIAKWKEYNEHLYSGKDDSRTTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSSAQEAALAYDEAARAMYGPCARLNFPKITDYPSVKESLKDSSMAASSSCSSAATAASDTTTTTSNQSEVCAVEDVIEKPANVNDKFNDCHKAYVSASPTSRMKQEPKDEAVDHMDTGAGEIQDVGLEGTHDTGQVAENVNKDQMDLSWIDGFDFIDDYLKSFSADELFQVDELLGLIDNNPIDNSVLMQGLDFGQMGFPGDGNPQVDDTPSSFIYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTVEPGDYNGGGEEPPFLNLDDDLNHDSNGMQARKGG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2224 392 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 362 - -
Gso2g2224 392 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Gso2g2224 392 MobiDBLite consensus disorder prediction 1 30 - -
Gso2g2224 392 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Gso2g2224 392 MobiDBLite consensus disorder prediction 45 79 - -
Gso2g2224 392 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Gso2g2224 392 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Gso2g2224 392 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Gso2g2224 392 MobiDBLite consensus disorder prediction 359 392 - -
Gso2g2224 392 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 362 - -
Gso2g2224 392 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Gso2g2224 392 MobiDBLite consensus disorder prediction 11 26 - -
Gso2g2224 392 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Gso2g2224 392 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2224 Gso-Chr2 46918368 46920850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2224 16 362 AP2-EREBP Transcription Factor Family AT2G40340 41.076 9.15e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g2224 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2224 - K09286 gmx:100800134 630.557