Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2221 ATGGAGGACAAGAACCTGACCTCAAAATGGTTTTTTAACCCCAACCCAAGTAGTCATTTTTTCCAGTTGTTTTTCTGTTTGTGGATTCTCATGGTGCCAGTGGTGGCGAGTGAAGAGCGTTGGGATGGGGTGGTTGTGGCACAGTCAAACTTCCTAGCACTTGAAGCGTTGAAGCAAGAGCTGGTTGACCCTGAAGGCTTCTTGAGAAGCTGGAACGACACTGGCTATGGAGCTTGTTCTGGAGCTTGGGTTGGTATCAAGTGTGCTCGGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGTTTGAAGGGCCACATCACTGAGAGGATCGGCCAACTTAGAGGGCTTAGAAAGCTTAGCCTTCACGACAACCAAATTGGTGGTTCAATCCCTTCAGCACTTGGACTTCTTCTCAACCTAAGAGGGGTTCAGCTCTTCAACAATAGGTTCACAGGGTCCATCCCTCCTTCGTTAGGGTCATCATTTCCTTTGCTTCAGTCTTTGGACCTCAGCAATAACTTGCTCACTGGGACAATCCCCATGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTGTCTGGCCCAATACCAACTAGCCTAACTCGCTTAACTTCTCTCACCTACTTGTCTCTTCAACACAATAATCTCTCGGGCTCTATTCCTAACACATGGGGTGGTAGCTTGAAAAATCACTTCTTTCGCCTTCGAAATCTGATCCTAGATCATAACTTGTTGAGCGGAAGCATTCCTGCTTCTTTGGGGAGCTTGAGTGAACTTACAGAGATTTCTCTTAGTCATAACCAGTTTAGTGGAGCTATCCCAGATGAAATAGGAAGCCTTTCTAGACTAAAGACAGTGGATTTTTCTAATAATGACTTGAATGGAAGCTTGCCTGCTACTCTCTCTAATGTTTCCTCACTCACTCTCTTAAATGTAGAGAACAACCACCTTGGCAATCCCATCCCAGAAGCTTTAGGTAGATTACATAATCTTTCTGTTCTAATTTTGAGCAGAAACCAATTTATTGGCCACATACCTCAAAGTGTTGGAAACATTTCAAAGCTTACACAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACAATCTGCGTAGTCTTAGTTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCAGTTCCAACCCTACTTGCCCAAAAATTTAACCCAAGCTCATTTGTGGGGAATATTCAACTATGTGGCTACAGCCCTTCAACCCCATGTCCCTCCCAAGCTCCTTCTGGTTCACCTCATGAAATATCAGAACACCGTCATCATAAGAAACTAGGCACCAAAGACATAATTCTCATAGTAGCTGGAGTGCTCCTTGTAGTTCTGGTAACAATTTGCTGCATTCTGCTATTCTGCTTGATCAGAAAAAGAGCAACATCAAATGCAGAGGCTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCAGCTGCTGCCAGGACAGAAAAAGGAGTTCCTCCCGTCGCAGGCGAAGCCGAAGCGGGTGGCGAGGCCGGAGGCAAACTAGTCCATTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACATATGGAACTGTGTACAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTGAAACGTTTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTCGAATCTGAAGTTAGTGTTATAGGAAGAATTCGACACCCAAATCTTTTGGCATTAAGAGCCTATTACTTAGGACCCAAAGGAGAAAAGCTTTTAGTATTTGATTACATGCCTAATGGAAGTCTTGCTTCTTTCCTACATGCTCGTGGACCAGAAACAGCAATTGATTGGGCAACAAGGATGAAAATAGCACAGGGAATGGCTCGTGGCTTGTTATACCTTCATTCCAATGAGAACATTATACATGGGAACCTTACGTCCAGCAATGTGCTGCTGGATGAGAATACGAATGCTAAAATAGCTGATTTTGGTCTTTCTCGGTTGATGACAACTGCAGCTAATTCTAACGTGATTGCCACTGCTGGAGCATTGGGATACCGAGCACCCGAGCTCTCGAAGCTTAACAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGCGTGGATTTACCTCAGTGGGTTGCATCCATTGTCAAAGAGGAGTGGACAAATGAGGTCTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAGATGCTGAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACTAGAAGTTCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCAGAGATATCAGCAGCCAGTTCGGGTGACGATGGAGCCATTCCTTCGACTAGTGAATGA 2502 0.4496 MEDKNLTSKWFFNPNPSSHFFQLFFCLWILMVPVVASEERWDGVVVAQSNFLALEALKQELVDPEGFLRSWNDTGYGACSGAWVGIKCARGQVIVIQLPWKGLKGHITERIGQLRGLRKLSLHDNQIGGSIPSALGLLLNLRGVQLFNNRFTGSIPPSLGSSFPLLQSLDLSNNLLTGTIPMSLGNATKLYWLNLSFNSLSGPIPTSLTRLTSLTYLSLQHNNLSGSIPNTWGGSLKNHFFRLRNLILDHNLLSGSIPASLGSLSELTEISLSHNQFSGAIPDEIGSLSRLKTVDFSNNDLNGSLPATLSNVSSLTLLNVENNHLGNPIPEALGRLHNLSVLILSRNQFIGHIPQSVGNISKLTQLDLSLNNLSGEIPVSFDNLRSLSFFNVSHNNLSGPVPTLLAQKFNPSSFVGNIQLCGYSPSTPCPSQAPSGSPHEISEHRHHKKLGTKDIILIVAGVLLVVLVTICCILLFCLIRKRATSNAEAGQATGRASASAAAARTEKGVPPVAGEAEAGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLASFLHARGPETAIDWATRMKIAQGMARGLLYLHSNENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLNKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARLEVQQVLQQLEEIRPEISAASSGDDGAIPSTSE* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2221 833 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 17 826 - -
Gso2g2221 833 SUPERFAMILY Protein kinase-like (PK-like) 546 814 IPR011009 -
Gso2g2221 833 SMART LRR_typ_2 384 407 IPR003591 -
Gso2g2221 833 SMART LRR_typ_2 264 288 IPR003591 -
Gso2g2221 833 SMART LRR_typ_2 211 234 IPR003591 -
Gso2g2221 833 SMART LRR_typ_2 114 138 IPR003591 -
Gso2g2221 833 SMART LRR_typ_2 336 360 IPR003591 -
Gso2g2221 833 SMART LRR_typ_2 163 187 IPR003591 -
Gso2g2221 833 Gene3D Ribonuclease Inhibitor 306 431 IPR032675 -
Gso2g2221 833 PRINTS Leucine-rich repeat signature 166 179 - -
Gso2g2221 833 PRINTS Leucine-rich repeat signature 360 373 - -
Gso2g2221 833 SUPERFAMILY L domain-like 87 421 - -
Gso2g2221 833 CDD STKc_IRAK 548 813 - -
Gso2g2221 833 ProSiteProfiles Protein kinase domain profile. 542 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2221 833 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 17 826 - -
Gso2g2221 833 Gene3D Phosphorylase Kinase; domain 1 548 619 - -
Gso2g2221 833 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Gso2g2221 833 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Gso2g2221 833 Pfam Protein tyrosine and serine/threonine kinase 545 810 IPR001245 GO:0004672|GO:0006468
Gso2g2221 833 Pfam Leucine rich repeat N-terminal domain 52 88 IPR013210 -
Gso2g2221 833 Gene3D Transferase(Phosphotransferase) domain 1 620 826 - -
Gso2g2221 833 Gene3D Ribonuclease Inhibitor 48 205 IPR032675 -
Gso2g2221 833 Gene3D Ribonuclease Inhibitor 206 305 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2221 Gso-Chr2 46894522 46897864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2221 41 815 Receptor kinase-like Gene Family AT3G51740 64.158 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso2g2221 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2221 - - gmx:100783979 1542.71