Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2197 ATGAAATGGGAAATAAAAAGCTCACAAAGCAAGGCACAACAAACATTAGAATGGTTTGTAATTTGTGTATTGTGTTATGTGCATATGGAAAGTTACTACTATTCTGGCTGGCCTCTGGCTCAATGCTACAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTCCCAACAACAACACAACAAACACTCCCTCTTGTTGCTTCTTCTTCTTCTGACCATGCAGCAGCATCTCTTCAATTTGGTGAGTTCCCTTCGTGGCCTGCACCCATTGGAGCAGAAGTTAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCATGTCTGATAAGATGGATAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGGATGTTGTTAGCAAAGCCGTTACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTACCACCAATCTCAAGATGAAAGCTACACAAAAAGAGTGAACATATTAAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAACTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGATAGTGATGAAGATAATAATAGTGTTTGCCTTAGCACTCTCAAACAATCACTTAAATCTGCTGTGAACAAAATTGCTTCGTTATCTGTGGCAACAAATTATCCCTCTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGTACAATAA 885 0.4147 MKWEIKSSQSKAQQTLEWFVICVLCYVHMESYYYSGWPLAQCYNSAPNSDQLSPFSVPTTTQQTLPLVASSSSDHAAASLQFGEFPSWPAPIGAEVRAASASKSHSQAEKRRRDRINAQLATLRKLIPMSDKMDKAALLGSVVDHVKDLKRKAMDVVSKAVTVPTETDEVTIDYHQSQDESYTKRVNILKENIIIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSDEDNNSVCLSTLKQSLKSAVNKIASLSVATNYPSRSKRQRFFLPSHYVQ* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2197 294 PANTHER TRANSCRIPTION FACTOR BHLH51 49 293 - -
Gso2g2197 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Gso2g2197 294 CDD ACT_UUR-ACR-like 198 233 - -
Gso2g2197 294 Pfam Helix-loop-helix DNA-binding domain 103 149 IPR011598 GO:0046983
Gso2g2197 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 153 IPR036638 GO:0046983
Gso2g2197 294 SMART finulus 106 155 IPR011598 GO:0046983
Gso2g2197 294 Gene3D - 95 157 IPR036638 GO:0046983
Gso2g2197 294 CDD bHLH_AtAIG1_like 95 173 - -
Gso2g2197 294 PANTHER TRANSCRIPTION FACTOR BHLH30 49 293 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2197 Gso-Chr2 46684391 46686312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2197 39 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.182 1.98e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g2197 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2197 - - gmx:100787169 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0493 14 4670253 4672042 Gso2g2197 2 46684391 46686312 GST
Gso18g0227 18 1962040 1963860 Gso2g2197 2 46684391 46686312 PCT
Gso13g1393 13 29457535 29459344 Gso2g2197 2 46684391 46686312 PCT
Gso2g2197 2 46684391 46686312 Gso18g0227 18 1962040 1963860 PCT
Gso2g2197 2 46684391 46686312 Gso13g1393 13 29457535 29459344 PCT