Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2188 ATGAAGAATAATAAATCACCCTTCTCCGCCGCCACCTTCACTCTCTTCAACGCTACCCTGTTAATCCTCTCTTCACTATCACCAACTCATGCCCTCGGTTCTGCCGCCACCCTCGCTGCCACCTCCTCCGCCGTATGCGGCATGGTGGCATCGGAGCCGACGCGGCGCATTGCGTGCTACCGCCACGGCGAAGTCGTCGCCGTCGCCCCCAACGTTTCGTTCTCGGCGATCTCCGGCGGCCGGAGCTACTTCTGCGGCCTTCGCTCCGGCAACTACAGCCTCCTCTGCTGGGACACCCTCTCCGGCTTCCAAAGCAAGAGGCTTTACAACAATGGCACTGTTCTATTAGAGAATCTCGCCCTCGGAGACTCCCAGGTTTGCGCCACCGTGGTCGGCGCTGGAACGGCGTCGTGCTGGAGAACCAACGCCGCCTTCGAATCGCCATCTGGGTCGGACCGGTTTGATTCCATTTCATCTGGGTCGGGCTTCTCTTGCGGAATTTTGAAGGGTAGTGATCGGGTTCGGTGTTGGGGTGTTGGGTCCATAGCGAGAAAAATGGAGAGTGAGTTTGGGAACATGTCTTTGGTGAGTCTTGTGGCTGGGGAGTCACATATTTGTGGGTTGAATTCAAGTGGGTATTTGGTTTGTAGAGGAAGTAACGATTTTGGTCAAATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTTTGGCGCTTGGGGCTGAGCATACTTGTGCTATTCGGAGATCCAATGGTTCTGTCGTTTGTTGGGGTGGGAGAGGGTTGTTTGAGGATGATGTTACAAAAACTGTTTCTTTTGAGGTTATTGTTTCTGGGTCCAATTTTACTTGTGGATTGACTACAAACAATTTTTCAGTCATTTGTTGGGGTCCTGGTTGGGCTAATGGTTCAGGTTATGAGATTCCCTTGCCTCCTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAATGTGGGATATATCCTCAATCTGAGTCTTTGTGTTCTGGCTATGGTAACATTTGTAAGCCAAAGCCTTGTTGGCCTGAAATGCTGGTGCCGGCTCCACCTGCGGTGGTGCCAGCATCACCACCGGGGCCTGCAGCTTCTCGGTCGAAGGCCTTGACTAAGGGGTTGTTGGCATTTGCCATTGTTGGATGCGTGGGAGGTGTTGCTGGGATATGCACTGCGATTTATTGTTTGTGGACTGGGGTTTGTTTTGGGAAGAAGAAAGTTCACAATTCTGTGCAGCCGACAATCACTAGAGGTGGCAGTGTAAATGGTGTGGGTGGTTCTAATAATAGCATTAGTCCTCCTTCAAGATCATCCACTATTAGGCGTCAAGGGTCACGGATAATGAGGCGTCAAAGGAGTGGAACATCATCCACAAAGCATCCTGAGAGGGCTGAGGAGTTCACTTTGGCTGAGCTTGTTGCTGCCACCAATAATTTCGCCCTTGAGAATAAGATTGGTGCTGGAAGCTATGGTGTTGTTTATAAAGGCAAACTCTTGGATGGTCGCGAGGTGGCAATCAAAAGGGGTGACACTAGTACCAAGATGAAGAAGTTTCAAGAGAAAGAGACTGCGTTTGAGTCAGAATTGGCCTTCTTATCCCGGTTACACCACAAGCACTTGGTTAGGTTGGTGGGGTTCTGTGAAGAGAAAGATGAGAGGCTGTTGGTGTATGAGTACATGAAGAATGGGGCATTGTATGATCATTTGCATGACAAGAACAATGTGGACAAGAGTAGTAGTGTCTTGAATTCTTGGAGAATGAGGATCAAAGTGGCGCTGGATGCTTCACGAGGGATTGAGTATCTCCATAATTATGCAGTTCCATCTATAATTCACAGAGATATCAAGTCTTCCAACATTCTCATTGATGCGACTTGGACGGCAAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCAGAATCCAACCATGATTTCCGACCAATGAAGGCAGCGGGAACAGTTGGATACATTGATCCCGAATATTATGGTCTAAATGTACTGACAGCAAAGAGTGATGTCTATGGGCTTGGAGTGGTGCTGCTAGAACTATTAACAGGAAAGAGGGCTATATTCAAGAATGATGAAAATGGTGGCACCCCAGTGAGTGTGGTAGACTTTGCAGTGCCACTAATTATGGCGGGAGAGTTGGCAAAAATTTTGGACCCCAGGGTTGAACCACCAGAGATGAATGAAACAGAAGCAGTGGAGTTAGTGGGATACACTGCTATGCATTGTGTAAATTTGGAGGGGAAGGACAGACCAACAATGGCTGATATTGTGGCAAATTTGGAGCGTGCTTTGGCTCTCTGTGATAGTAGTCATGGCAGCATTTCCAGTGGTACAATCTCCATTGTATCTGACTGA 2388 0.4853 MKNNKSPFSAATFTLFNATLLILSSLSPTHALGSAATLAATSSAVCGMVASEPTRRIACYRHGEVVAVAPNVSFSAISGGRSYFCGLRSGNYSLLCWDTLSGFQSKRLYNNGTVLLENLALGDSQVCATVVGAGTASCWRTNAAFESPSGSDRFDSISSGSGFSCGILKGSDRVRCWGVGSIARKMESEFGNMSLVSLVAGESHICGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGLALGAEHTCAIRRSNGSVVCWGGRGLFEDDVTKTVSFEVIVSGSNFTCGLTTNNFSVICWGPGWANGSGYEIPLPPILPGPCVQSSCSECGIYPQSESLCSGYGNICKPKPCWPEMLVPAPPAVVPASPPGPAASRSKALTKGLLAFAIVGCVGGVAGICTAIYCLWTGVCFGKKKVHNSVQPTITRGGSVNGVGGSNNSISPPSRSSTIRRQGSRIMRRQRSGTSSTKHPERAEEFTLAELVAATNNFALENKIGAGSYGVVYKGKLLDGREVAIKRGDTSTKMKKFQEKETAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKSSSVLNSWRMRIKVALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESNHDFRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPVSVVDFAVPLIMAGELAKILDPRVEPPEMNETEAVELVGYTAMHCVNLEGKDRPTMADIVANLERALALCDSSHGSISSGTISIVSD* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2188 795 ProSiteProfiles Protein kinase domain profile. 486 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2188 795 MobiDBLite consensus disorder prediction 421 449 - -
Gso2g2188 795 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 793 IPR044815 GO:0004674
Gso2g2188 795 Pfam Regulator of chromosome condensation (RCC1) repeat 196 224 - -
Gso2g2188 795 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Gso2g2188 795 Gene3D Transferase(Phosphotransferase) domain 1 567 784 - -
Gso2g2188 795 SUPERFAMILY RCC1/BLIP-II 66 301 IPR009091 -
Gso2g2188 795 MobiDBLite consensus disorder prediction 421 470 - -
Gso2g2188 795 SMART serkin_6 486 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2188 795 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 793 - -
Gso2g2188 795 Gene3D Phosphorylase Kinase; domain 1 447 566 - -
Gso2g2188 795 Pfam Protein kinase domain 488 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2188 795 Gene3D - 146 342 IPR009091 -
Gso2g2188 795 SUPERFAMILY Protein kinase-like (PK-like) 464 771 IPR011009 -
Gso2g2188 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2188 Gso-Chr2 46552331 46555084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2188 9 795 Receptor kinase-like Gene Family AT3G55950 59.512 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso2g2188 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2188 - - gmx:100782916 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0501 14 4807988 4810785 Gso2g2188 2 46552331 46555084 GST
Gso18g0238 18 2073801 2075174 Gso2g2188 2 46552331 46555084 PCT
Gso13g1384 13 29339317 29340818 Gso2g2188 2 46552331 46555084 PCT
Gso2g2188 2 46552331 46555084 Gso18g0238 18 2073801 2075174 PCT
Gso2g2188 2 46552331 46555084 Gso13g1384 13 29339317 29340818 PCT