Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2175 ATGGCTTCCTCATACCGTGACCGTACGTCGGAGTTCCGATTACTATCGGAGACTATGAAGAAGATCGGAGGTCCGGTTCAACCCGAGAATCCTCCTTCGACCTCTCGCGGCGGCGAGTCGTCGTATTCGAGATCCGAATTCAACCGAAAGGCCTCGCGAATCGGGTTGGGGATCCACGAGACCTCGCAGAAGATCGCGAGGCTCGCGCAGCTGGCGAGGAAATCGTCCATGTTCAACGATCCCGCCGTGGAGATTCAGGAGCTGACTGTTCTGATCAAGAACGAGATCACGACACTGAACTCGGCTCTCTCCGATTTGCAAACCATTCAGAACACGGATATGGCTGACGGCGGTTACTCGCAGGATACGATTGTGCATTCCACCGCGGTTTGTGATGACTTGAAGAGCAAACTCATGGGAGCCACAAAACACCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCATGAGAACAGGAAGCAGATATTTTCCAAGAATGCATCAAGAGAGAACCCTTTCCAGCATCAGCCAAAGCCAGCTAATGAGCCACCACCTTGGTCAAATTCATCGAATGCATCAGAGAGTTTGCAACAAGAATCAGCATTACCATCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGTGGACAACACTCCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTGCCTCGGCATGAAAACTATGCTCAAAGTCGAGCAACTGCTCTGCACAATGTGGAATCTACTATCACAGAACTAAGTGGGATTTTCTCACATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGCCATTCTGATACTTTTCCTCACGATCTTCATATTCTTTGTCGCCTAA 1008 0.4772 MASSYRDRTSEFRLLSETMKKIGGPVQPENPPSTSRGGESSYSRSEFNRKASRIGLGIHETSQKIARLAQLARKSSMFNDPAVEIQELTVLIKNEITTLNSALSDLQTIQNTDMADGGYSQDTIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHENRKQIFSKNASRENPFQHQPKPANEPPPWSNSSNASESLQQESALPSNGAPVGNQLRRRLAVDNTPSQQMEMSMVQQVVPRHENYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAILILFLTIFIFFVA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2175 335 PANTHER SYNTAXIN 4 334 IPR045242 -
Gso2g2175 335 MobiDBLite consensus disorder prediction 167 212 - -
Gso2g2175 335 MobiDBLite consensus disorder prediction 188 210 - -
Gso2g2175 335 PANTHER SYNTAXIN-31 4 334 - -
Gso2g2175 335 CDD SNARE_syntaxin5 246 331 - -
Gso2g2175 335 MobiDBLite consensus disorder prediction 1 46 - -
Gso2g2175 335 SMART tSNARE_6 238 305 IPR000727 -
Gso2g2175 335 MobiDBLite consensus disorder prediction 28 46 - -
Gso2g2175 335 Pfam SNARE domain 280 331 IPR000727 -
Gso2g2175 335 ProSitePatterns Syntaxin / epimorphin family signature. 249 288 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso2g2175 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 243 305 IPR000727 -
Gso2g2175 335 SUPERFAMILY t-snare proteins 43 298 IPR010989 GO:0016020|GO:0016192
Gso2g2175 335 Gene3D - 40 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2175 Gso-Chr2 46415164 46419480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2175 1 335 SNARE and Associated Proteins AT5G05760 66.667 1.43e-150 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2175 K08490 - gmx:100777383 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0516 14 4945514 4950875 Gso2g2175 2 46415164 46419480 GST