Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2168 ATGGACGAGGGCTTGTCAGGCTTTTGCATTAGATCATCATCAGGAAGTGTCCGTGGCAAAAGTGGCACCAAGTGTGGGCGTTGGAATCCCACCACTGAACAGGTTAAACTTCTAACTGAACTCTTCAGATCAGGGCTCCGAACCCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTTAGCTTTTATGGCAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCTCGGGAAAGACAGAAGAACCGTAAGCTCTCCTTTGATGATCACAAGGATCTCATTTGTAGACAAAATGCACCTTCTACACAAAGTCTTGCTGAGATGTACCAAGTTTCAAAGCCAGATAGGGTGATTGAGACTCTTCAACTCTTTCCCTTAAATTCCTTTGGTGAATCTGAACCAGAGAAGTTGAGGTTGCGTGCAAGTGAATGTCGGGATAATAATAATACAATGTTTTCATACACGATGGGTGAACAAATGGAGCACCCACCATTAGACCTGCGCTTGAGCTTTCTGTAA 534 0.4401 MDEGLSGFCIRSSSGSVRGKSGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKNRKLSFDDHKDLICRQNAPSTQSLAEMYQVSKPDRVIETLQLFPLNSFGESEPEKLRLRASECRDNNNTMFSYTMGEQMEHPPLDLRLSFL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2168 177 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 166 - -
Gso2g2168 177 Pfam Homeodomain 25 85 IPR001356 GO:0003677
Gso2g2168 177 CDD homeodomain 27 87 IPR001356 GO:0003677
Gso2g2168 177 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 166 IPR044555 GO:0003700|GO:0099402
Gso2g2168 177 SUPERFAMILY Homeodomain-like 26 89 IPR009057 -
Gso2g2168 177 SMART HOX_1 23 90 IPR001356 GO:0003677
Gso2g2168 177 Gene3D - 24 92 - -
Gso2g2168 177 ProSiteProfiles 'Homeobox' domain profile. 21 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2168 Gso-Chr2 46346935 46348370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2168 11 177 Wox Gene Family AT3G11260 58.889 3.00e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso2g2168 Homeodomain 5.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2168 - - gmx:100820304 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0263 18 2312960 2313890 Gso2g2168 2 46346935 46348370 PCT
Gso13g1355 13 29041060 29042265 Gso2g2168 2 46346935 46348370 PCT
Gso2g2168 2 46346935 46348370 Gso18g0263 18 2312960 2313890 PCT
Gso2g2168 2 46346935 46348370 Gso13g1355 13 29041060 29042265 PCT