Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2167 ATGCCTTCTCCTGTACCCACCTTGCTCTCCAAATGCACCGTCTTCCCAGACCAAAAGTCCACTCTCGGAAACCTCAAACTCTCCGTTTCGGACCTTCCCATGTTGTCCTGCCACTACATCCAAAAGGGATGCCTCTTCACCCACCCCAATCTCCCACTCCACTCTTTGATCCCTCTCCTTAAATCCTCACTCTCTCGCACTCTTTCTCTCTTTCCACCTCTCGCCGGCCGTTTAATCACCGATTCCGACAGTTACGTCTATATCGCTTGCAACGACGCCGGCGTCGATTTCATTCACGCCAATGCCACTGCCCTTCGCATCTGTGACTTACTCTCCCAACTCGATGTTCCTGAATCTTTTAAGGAATTCTTCGCCTTCGATAGGAAAGTCAGCTACACCGGTCACTTCTCTCCGATTCTCGCCGTTCAGGTCACCGAACTCGCCGACGGCGTTTTCATCGGCTGCGCCGTCAATCACGCCGTCACCGACGGCACCTCCTTCTGGAATTTCTTCAACACCTTCGCTCAGCTCTCTAGAGGAGCCAGCAACTGCATCCGCAATATACCGGATTTCCACCGCGAGTCGGTTCTCATCTCCGACGCCGTTCTCCGTTTGCCGGAGGGTGGTCCTCAGGTCACGTTCGACGCCAACGCGCCTCTGCGCGAGAGAATATTCAGCTTCAGCCGCGAAGCGATTCAGAAACTCAAAGCCATAGCGAACAACCGCCGGTGGCCGGAAAACAACAACTTCGCCGGCGAGTTGTTACGGAAGAAAAGCAACGATAATCTACTAAAGGAGAACAAGGCGACGACAATTCTTGAGAACTGGTTCAAGGTGAATTCAAATTCGATTTCGAAACCGCAAACAGTGGAAATTTCGTCGTTTCAATCAGTGTGCGCGCTTCTGTGGCGCGGGGTGACGCGAGCGAGGAAATTTCCTTCGTCCAAAACGACGACGTTTAGAATGGCGGTTAACTGTCGCCACCGGTTAGAACCCAAACTGGAAGCGTATTACTTCGGGAACGCGATTCAGAGCGTGCCTACTTATGCTTCCGCGGGTGAGGTGTTATCCAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACAAAAACGTGAAGGCGCACGACGACACTATGGTGCGGCGCTTCGTAGAGGATTGGGAGCGCAACCCGAGGTGCTTCCCACTTGGGAACCCTGACGGTGCATCCATCACAATGGGTAGTTCTCCGAGGTTTCCAATGTACGATAACAATTTCGGGTGGGGAAGACCACTCGCGGTGCGAAGCGGAAGAGCGAACAAATTTGACGGTAAGATCTCAGCGTTTCCCGGAAGAGATGGAACAGGGACCGTTGATTTGGAGGTTGTTCTAGCGCCCGAAACCATGGAGGCGCTAGAGTCTGATCCCGAATTCATGAAATATGCAACGTGTCAATTATGA 1437 0.5296 MPSPVPTLLSKCTVFPDQKSTLGNLKLSVSDLPMLSCHYIQKGCLFTHPNLPLHSLIPLLKSSLSRTLSLFPPLAGRLITDSDSYVYIACNDAGVDFIHANATALRICDLLSQLDVPESFKEFFAFDRKVSYTGHFSPILAVQVTELADGVFIGCAVNHAVTDGTSFWNFFNTFAQLSRGASNCIRNIPDFHRESVLISDAVLRLPEGGPQVTFDANAPLRERIFSFSREAIQKLKAIANNRRWPENNNFAGELLRKKSNDNLLKENKATTILENWFKVNSNSISKPQTVEISSFQSVCALLWRGVTRARKFPSSKTTTFRMAVNCRHRLEPKLEAYYFGNAIQSVPTYASAGEVLSRDLRWCAEQLNKNVKAHDDTMVRRFVEDWERNPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLAPETMEALESDPEFMKYATCQL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2167 478 Pfam Transferase family 7 471 - -
Gso2g2167 478 Gene3D - 219 469 IPR023213 -
Gso2g2167 478 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 474 - -
Gso2g2167 478 Gene3D - 7 204 IPR023213 -
Gso2g2167 478 PANTHER OS01G0854000 PROTEIN 7 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2167 Gso-Chr2 46333809 46335674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2167 59 465 Monolignol Biosynthesis Gene Families AT5G48930 27.098 3.47e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2167 - - gmx:100500612 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0525 14 5015636 5017324 Gso2g2167 2 46333809 46335674 GST
Gso18g0266 18 2343587 2345390 Gso2g2167 2 46333809 46335674 PCT
Gso2g2167 2 46333809 46335674 Gso13g1353 13 29017891 29019817 PCT