Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2163 ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTCTACACCCCTTGTTATATGCCAAACTCAAATTGGTTTGTGCAAGAGAGCCTCAGCACAGAGTGGACTAGAGAAGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCCGCTATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGAGTGAAATCGAAGCAGGGCATGTTCCGATTCCCGGCTACCTTGCATCTTCTTTCACCTTTGAGCTGGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCTTGCACCTGTCAGAGGCTCTGATCAAGAGAGAAAGAAAGGAGTCCCATGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTTTGAAGTATGGTAAAGGAGATTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCAACCCAAGTTGCTAGCCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTGGAGGCAAAGATAAAAGGAGACCTAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTTCTGCATCAGACAAGAACAAGCCTCCTGTGATTGCACCACAGCAGAAGCTGAATAGCATGTCAAAAGTACAGCTGGACTGGACTAGTAGCCACTACAATGATGGATCACTCATGGTTTTCAACCCAAATAGTGATGACTTGTTTGTGTCATCTTCATCTGATGTCACTTCCATGGCCCTGAAAATGCAAGGGCAAGATCTCTATGAATGTGCCTTACGTGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCAGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTTGGTATTCATGCACTGTAA 939 0.4313 MIFPRFCTNLKGMELETLYTPCYMPNSNWFVQESLSTEWTREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGHVPIPGYLASSFTFELVDNHNYDGCRRRLAPVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETSASDKNKPPVIAPQQKLNSMSKVQLDWTSSHYNDGSLMVFNPNSDDLFVSSSSDVTSMALKMQGQDLYECALREAYAKVKVPGFSMAPRDFNNEAVFGIHAL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2163 312 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Gso2g2163 312 Gene3D - 32 98 - -
Gso2g2163 312 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Gso2g2163 312 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
Gso2g2163 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 293 IPR043363 -
Gso2g2163 312 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Gso2g2163 312 SUPERFAMILY Homeodomain-like 37 91 IPR009057 -
Gso2g2163 312 Gene3D - 137 188 - -
Gso2g2163 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Gso2g2163 312 ProSiteProfiles SANT domain profile. 34 89 IPR017884 -
Gso2g2163 312 CDD SANT 138 182 IPR001005 -
Gso2g2163 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 15 293 - -
Gso2g2163 312 SMART sant 35 87 IPR001005 -
Gso2g2163 312 SMART sant 135 185 IPR001005 -
Gso2g2163 312 CDD SANT 38 84 IPR001005 -
Gso2g2163 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2163 Gso-Chr2 46277471 46279794 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g2163 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2163 - - gmx:778039 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0529 14 5079370 5081714 Gso2g2163 2 46277471 46279794 GST
Gso18g0270 18 2393787 2396233 Gso2g2163 2 46277471 46279794 PCT
Gso13g1349 13 28962335 28964823 Gso2g2163 2 46277471 46279794 PCT
Gso2g2163 2 46277471 46279794 Gso18g0270 18 2393787 2396233 PCT
Gso2g2163 2 46277471 46279794 Gso13g1349 13 28962335 28964823 PCT