Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2154 ATGACCGAAGAAGACCGCTCCGCCGAAGAAAACGTCCGCAATGGCGTCGCCGCGAAGGATCTCGGCGGCAAGGAGAAGGACGTCGCGGAAGTGACTTCGGCCGCTGAAGGTTTGGTTGCCGGAAGCGTGAAGGGACCTTGGTCACCGGAGGAGGACGCGCTGTTGAGCCGATTGGTGGCGCAGTTCGGGGCAAGGAACTGGGGCATGATCGCGCGGGGAGTGCCAGGACGCTCCAGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTTGACCCTTGCTTGAAACGCAAGCCCTTCACTGAGGAAGAGGATAACATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAATAATTGCTAAGCTTCTTCCAGGTAGAACAGATAATGCAATCAAGAATCACTGGAATTCTACACTGACGCGCAAGCGTATGGAAATGGGAAGATATGTCCCAGCACATGCTGATGTGATCGAAGATGGTACTGGTAACTTTGAAAAAACAAAAGCATCCTCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTGCAGAAGTCAGAAATGTCATGATGAATGATGAAACTAAACCTCCAACAAAAGATGATGCTAAAGTGGAGGAACATGCTACTCTTCATCGACCAGTAGCACGTGTTAGTGCATTTAGTTTTTATAACTCTCCAGGCAGGCCAACAATGGGGTCATGTTCAAAGATGTTCCCAAGGCAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGACCCTGCAAGTTATTTGATAATATTGATTGTGAGCCCATGGTTTCATCAAAAGATGATGCTAAAGTGGAGGAACATGCTACTCTTCATCGACCAGTAGCACGTGTTAGTGCATTTAGTTTTTATAACTCTCCAGGCAGGCCAACAATGGGATCATGTTCAAAGATGTTCCCAAGGCAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGATCCTGCAAGTTATTTGATAATATTGATTGTGAGCCCATGGTTCCATCACAATGTGGTCATGGCTGCTGTTCAGGAGACTCGAGGGAAAGCCATTTGCATGGTTCACTTCTAGGTCCCGAGTTTGTTGACTATTTGGAGTCACCTTTCTCTAGTCATGCATTTCTTTCTATAGCTACGGACTTGAACTGTTGTCCAAAGTATCACAGAAAATGA 1200 0.475 MTEEDRSAEENVRNGVAAKDLGGKEKDVAEVTSAAEGLVAGSVKGPWSPEEDALLSRLVAQFGARNWGMIARGVPGRSSKSCRLRWCNQLDPCLKRKPFTEEEDNIIVSAHAIHGNKWAIIAKLLPGRTDNAIKNHWNSTLTRKRMEMGRYVPAHADVIEDGTGNFEKTKASSEETMSIGDINSLNPAEVRNVMMNDETKPPTKDDAKVEEHATLHRPVARVSAFSFYNSPGRPTMGSCSKMFPRQSPLIQSPKPDVGPCKLFDNIDCEPMVSSKDDAKVEEHATLHRPVARVSAFSFYNSPGRPTMGSCSKMFPRQSPLIQSPKPDVGSCKLFDNIDCEPMVPSQCGHGCCSGDSRESHLHGSLLGPEFVDYLESPFSSHAFLSIATDLNCCPKYHRK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2154 399 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Gso2g2154 399 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Gso2g2154 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 90 IPR017930 -
Gso2g2154 399 SUPERFAMILY Homeodomain-like 42 137 IPR009057 -
Gso2g2154 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Gso2g2154 399 CDD SANT 46 88 IPR001005 -
Gso2g2154 399 SMART sant 43 92 IPR001005 -
Gso2g2154 399 SMART sant 95 143 IPR001005 -
Gso2g2154 399 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 17 275 - -
Gso2g2154 399 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 276 393 - -
Gso2g2154 399 PANTHER MYB PROTEIN-RELATED 17 275 - -
Gso2g2154 399 PANTHER MYB PROTEIN-RELATED 276 393 - -
Gso2g2154 399 ProSiteProfiles Myb-like domain profile. 44 90 IPR001005 -
Gso2g2154 399 Gene3D - 97 157 - -
Gso2g2154 399 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Gso2g2154 399 MobiDBLite consensus disorder prediction 1 21 - -
Gso2g2154 399 CDD SANT 98 141 IPR001005 -
Gso2g2154 399 Gene3D - 43 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2154 Gso-Chr2 46198284 46207139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2154 39 391 MYB Transcription Factor Family AT3G55730 42.373 2.91e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g2154 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2154 K09422 - gmx:100817109 827.394