LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g2154	ATGACCGAAGAAGACCGCTCCGCCGAAGAAAACGTCCGCAATGGCGTCGCCGCGAAGGATCTCGGCGGCAAGGAGAAGGACGTCGCGGAAGTGACTTCGGCCGCTGAAGGTTTGGTTGCCGGAAGCGTGAAGGGACCTTGGTCACCGGAGGAGGACGCGCTGTTGAGCCGATTGGTGGCGCAGTTCGGGGCAAGGAACTGGGGCATGATCGCGCGGGGAGTGCCAGGACGCTCCAGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTTGACCCTTGCTTGAAACGCAAGCCCTTCACTGAGGAAGAGGATAACATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAATAATTGCTAAGCTTCTTCCAGGTAGAACAGATAATGCAATCAAGAATCACTGGAATTCTACACTGACGCGCAAGCGTATGGAAATGGGAAGATATGTCCCAGCACATGCTGATGTGATCGAAGATGGTACTGGTAACTTTGAAAAAACAAAAGCATCCTCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTGCAGAAGTCAGAAATGTCATGATGAATGATGAAACTAAACCTCCAACAAAAGATGATGCTAAAGTGGAGGAACATGCTACTCTTCATCGACCAGTAGCACGTGTTAGTGCATTTAGTTTTTATAACTCTCCAGGCAGGCCAACAATGGGGTCATGTTCAAAGATGTTCCCAAGGCAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGACCCTGCAAGTTATTTGATAATATTGATTGTGAGCCCATGGTTTCATCAAAAGATGATGCTAAAGTGGAGGAACATGCTACTCTTCATCGACCAGTAGCACGTGTTAGTGCATTTAGTTTTTATAACTCTCCAGGCAGGCCAACAATGGGATCATGTTCAAAGATGTTCCCAAGGCAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGATCCTGCAAGTTATTTGATAATATTGATTGTGAGCCCATGGTTCCATCACAATGTGGTCATGGCTGCTGTTCAGGAGACTCGAGGGAAAGCCATTTGCATGGTTCACTTCTAGGTCCCGAGTTTGTTGACTATTTGGAGTCACCTTTCTCTAGTCATGCATTTCTTTCTATAGCTACGGACTTGAACTGTTGTCCAAAGTATCACAGAAAATGA	1200	0.475	MTEEDRSAEENVRNGVAAKDLGGKEKDVAEVTSAAEGLVAGSVKGPWSPEEDALLSRLVAQFGARNWGMIARGVPGRSSKSCRLRWCNQLDPCLKRKPFTEEEDNIIVSAHAIHGNKWAIIAKLLPGRTDNAIKNHWNSTLTRKRMEMGRYVPAHADVIEDGTGNFEKTKASSEETMSIGDINSLNPAEVRNVMMNDETKPPTKDDAKVEEHATLHRPVARVSAFSFYNSPGRPTMGSCSKMFPRQSPLIQSPKPDVGPCKLFDNIDCEPMVSSKDDAKVEEHATLHRPVARVSAFSFYNSPGRPTMGSCSKMFPRQSPLIQSPKPDVGSCKLFDNIDCEPMVPSQCGHGCCSGDSRESHLHGSLLGPEFVDYLESPFSSHAFLSIATDLNCCPKYHRK*	400

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso2g2154	399	Pfam	Myb-like DNA-binding domain	96	140	IPR001005	-
Gso2g2154	399	Pfam	Myb-like DNA-binding domain	44	90	IPR001005	-
Gso2g2154	399	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	43	90	IPR017930	-
Gso2g2154	399	SUPERFAMILY	Homeodomain-like	42	137	IPR009057	-
Gso2g2154	399	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	91	145	IPR017930	-
Gso2g2154	399	CDD	SANT	46	88	IPR001005	-
Gso2g2154	399	SMART	sant	43	92	IPR001005	-
Gso2g2154	399	SMART	sant	95	143	IPR001005	-
Gso2g2154	399	PANTHER	MYB TRANSCRIPTION FACTOR-LIKE PROTEIN	17	275	-	-
Gso2g2154	399	PANTHER	MYB TRANSCRIPTION FACTOR-LIKE PROTEIN	276	393	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g2154	Gso-Chr2	46198284	46207139	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g2154	39	391	MYB Transcription Factor Family	AT3G55730	42.373	2.91e-82	255

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Gso2g2154		Myb_DNA-binding	3.1e-14	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso2g2154	K09422		-	gmx:100817109	827.394

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