Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2153 ATGTTGGTTACTGAGGACAAGTCTCATGTTGCTGTTGCTATAGACAATGATGGCTGTTGTCACCGGAGCTCTGCCGGCGGTGAGGGGTGCTCCGACGCTAGCGACCGGACAGATAAGGAGCAAAGGAGGTCCTCCCATGTTTCTGGCACTGAGATTGTGGGAGTGTGTGAGGAGAGAGGATCAGAGTGTTCAGTGGAGGTGGATCTGGTTCCTGAGGTTAAGGTGCATTTGGCCAATGAGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACTCCCATTGAGTTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCCGAGGCTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCAGTTGCACGCAATGTAGCCGGAGCTATTGAAATTCAAATGACAGAACAGTGGAATGAGGCAAACGATGCTTCCACGGCACCATCATCTGGACCGGCACCACTGGCAGAAACTCAAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTTCTGCTAGCCTGTATGGTGTTTGCCTTTGTCATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 624 0.4904 MLVTEDKSHVAVAIDNDGCCHRSSAGGEGCSDASDRTDKEQRRSSHVSGTEIVGVCEERGSECSVEVDLVPEVKVHLANEERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSVARNVAGAIEIQMTEQWNEANDASTAPSSGPAPLAETQNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2153 207 ProSiteProfiles Zinc finger RING-CH-type profile. 76 142 IPR011016 GO:0008270
Gso2g2153 207 PANTHER ZINC FINGER, RING-CH-TYPE 5 207 - -
Gso2g2153 207 CDD RING_CH-C4HC3_MARCH 84 136 - -
Gso2g2153 207 SUPERFAMILY RING/U-box 80 138 - -
Gso2g2153 207 PANTHER OS01G0850200 PROTEIN 5 207 - -
Gso2g2153 207 MobiDBLite consensus disorder prediction 22 46 - -
Gso2g2153 207 MobiDBLite consensus disorder prediction 32 46 - -
Gso2g2153 207 Pfam RING-variant domain 84 135 IPR011016 GO:0008270
Gso2g2153 207 SMART ringv_2 83 136 IPR011016 GO:0008270
Gso2g2153 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2153 Gso-Chr2 46189426 46194624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2153 38 207 C3H Transcription Factor Family AT5G05830 64.804 2.09e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2153 - - gmx:100816407 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0541 14 5160517 5165281 Gso2g2153 2 46189426 46194624 GST