Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2134 ATGAAGGCATTGATTCTGGTTGGGGGATTTGGAACAAGGCTGAGGCCACTGACACTCAGTTTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCTATGATTTTGCATCAGATAGAAGCCCTTAAGGCCATTGGAGTGACTGAGGTAGTGCTAGCCATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAATCAAAGCTCGGCATCAAGATCACATGTTCTCAGGAAACTGAACCACTGGGAACAGCAGGTCCCCTGGCTCTTGCTAGGGATAAGCTGATAGATGATTCTGGAGAACCCTTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGAAATGATTGAATTCCATAAAAGCCATGGAGGAGAGGCTTCCATAATGGTAACAAAGGTTGATGAGCCATCAAAGTACGGCGTGGTTGTGATGGAAGAGAGCACAGGGCAGGTTGATAAATTTGTTGAAAAACCGAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACCTGCTGAACCCCTCTGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATTGAGAAAGAGGTGTTTCCAAAGATTGCTGCAGAGAAAAAGCTATTTGCAATGGTCCTGCCAGGATTTTGGATGGACATTGGACAACCGAGGGACTATATTTCTGGCCTGAGGCTTTACCTGGACTCATTGAAGAAGAAGTCATCATCTAAGTTGGCCAGTGGCTCTCAATTTGTAGGGAATGTCATTGTGGATGAGACAGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCTATTGGTCCTGGCTGCATTATTGAGCAAGGTGTTAGACTCAAAAGCTGCACAATAATGCGTGGAGTCCGGGTTAAGAAGCATGCTTGTGTATCCAGCAGTATTGTTGGGTGGCATTCCACTGTTGGGCAATGGGCTCGAGTGGATAATATGACCATCCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTTGTTTTGCCACACAAGGAGATCAAGTCAAATATTCTGAAGCCGGAGATTGTCATGTGA 1086 0.4383 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVDKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLFAMVLPGFWMDIGQPRDYISGLRLYLDSLKKKSSSKLASGSQFVGNVIVDETAKIGEGCLIGPDVAIGPGCIIEQGVRLKSCTIMRGVRVKKHACVSSSIVGWHSTVGQWARVDNMTILGEDVHVCDEIYSNGGVVLPHKEIKSNILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2134 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Gso2g2134 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Gso2g2134 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 293 IPR001451 -
Gso2g2134 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Gso2g2134 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Gso2g2134 361 Gene3D Hexapeptide repeat proteins 235 358 - -
Gso2g2134 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Gso2g2134 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2134 Gso-Chr2 46001477 46004497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2134 1 147 Eukaryotic Initiation Factors Gene Family AT4G18300 23.871 1.26e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2134 K00966 - gmx:100808375 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0564 14 5400181 5403364 Gso2g2134 2 46001477 46004497 GST
Gso18g0301 18 2725329 2729262 Gso2g2134 2 46001477 46004497 PCT
Gso13g1321 13 28631882 28635719 Gso2g2134 2 46001477 46004497 PCT
Gso2g2134 2 46001477 46004497 Gso18g0301 18 2725329 2729262 PCT
Gso2g2134 2 46001477 46004497 Gso13g1321 13 28631882 28635719 PCT