Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2121 ATGTCTTCCCATTGGTGTCACCGGTGCAACAAATTTGTGAGAGCATGGAGACAAGAAATAATGCCGGTTTGTCCCGATTGCGACAGCGGATTCGTCGAAGAGATCCAACCTTCGAACCGCTCCGTCCACCACGTGGAAACCCGCCGCCGTAGGTTCCCGACGGGGACGGCAATGTACATGATCGGCCACAGTTCTAATAACTCCGACTACAACCCCCGTTCCTCTCGCCGTCATCATTGCCGGTACGTTACCAGCCACCGGTCACCGCTTAATCCGGTCATCATGCTCCAGAGCGAGGGAACAAGCCGGGACCGTGGCTCCGGCTTCGACCTTTTCTTCGACGACGGAGCCGGTTCCGGTCTCCGACCACTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGGTTTGACCGTGTCATGGACCAGCTTTCCCAGGTGGAATCGAACTCCGGCATGGGAAGTAACGACCAGCATAACCACGCGCCGGCGTCGAAGTCCGCCGTGGAGTTGCTCCCGTCGATCGAGATCGACGAGACTCACACGGCGACTGAATCGCACTGTGCGGTTTGCAAGGAGCCCTTCGAGCTTTCCACCATGGCAAAGGAAATGCCATGCAAACACATATACCACGCGGAATGCATCTTACCGTGGCTAGCAATTAAAAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCGTGCGAGAATGTCGCACGTGCGAGATTGGAGCGCGTGGAAGAGGAGGAGGAGGAAGAGAACAACAACAATGTGGGATTAACGATTTTGAGGTTACCCGGTGGAGGGTTTGCCGTGGGGAGATTAGGAAGAAGAGAGGGTGAGAGAGAGGTTAACGTGCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTCAACAACGTTGTTGTGGGTGAACCGAGGAGGGTTTCGTGGTCGGTGTCGGAGTCTAGAGGGAGCAGAAGAGGTGGCGCGTTTAGGAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGAGTTGGCCCTAATCGTTCTTCTAACACTTCGAGAACTACGGTGATGAGGAGTAATAGTTTTAGGGCTTCTTCTCGTCCTAATAACGTGGGTCCCTCTCCACCTTCTTCGCGTAGGACTTGGTCAATGGATGTCAACGAGGGAACCAGACCATGGTAA 1176 0.5468 MSSHWCHRCNKFVRAWRQEIMPVCPDCDSGFVEEIQPSNRSVHHVETRRRRFPTGTAMYMIGHSSNNSDYNPRSSRRHHCRYVTSHRSPLNPVIMLQSEGTSRDRGSGFDLFFDDGAGSGLRPLPPRMSEFLLGTGFDRVMDQLSQVESNSGMGSNDQHNHAPASKSAVELLPSIEIDETHTATESHCAVCKEPFELSTMAKEMPCKHIYHAECILPWLAIKNSCPVCRHELPCENVARARLERVEEEEEEENNNNVGLTILRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNVVVGEPRRVSWSVSESRGSRRGGAFRRMFNGLFSCLRGGGVGPNRSSNTSRTTVMRSNSFRASSRPNNVGPSPPSSRRTWSMDVNEGTRPW* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2121 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Gso2g2121 391 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Gso2g2121 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 335 - -
Gso2g2121 391 MobiDBLite consensus disorder prediction 148 167 - -
Gso2g2121 391 Pfam Protein of unknown function (DUF1117) 257 362 IPR010543 -
Gso2g2121 391 SMART ring_2 188 228 IPR001841 -
Gso2g2121 391 SUPERFAMILY RING/U-box 173 233 - -
Gso2g2121 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 335 - -
Gso2g2121 391 Coils Coil 235 262 - -
Gso2g2121 391 MobiDBLite consensus disorder prediction 341 383 - -
Gso2g2121 391 MobiDBLite consensus disorder prediction 148 163 - -
Gso2g2121 391 MobiDBLite consensus disorder prediction 339 391 - -
Gso2g2121 391 Pfam zinc-ribbon 3 35 IPR039525 GO:0061630
Gso2g2121 391 CDD RING-H2_RNF181 188 232 - -
Gso2g2121 391 Pfam Ring finger domain 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2121 Gso-Chr2 45843325 45845163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2121 123 236 C3H Transcription Factor Family AT5G01980 39.474 4.17e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2121 - K11982 gmx:106796723 748.429