Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2117 ATGCCTTCTCTCATCGCCATTGTGACCCTCATAGCCGTTGTTCTGACTTCCACCGAGGCGAGGATCCCGGGCGCCTACAGCGGCGGCGCGTGGGAGACCGCGCACGCCACGTTCTACGGCGGCAGCGACGCGTCGGGGACAATGGGCGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGCTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACAACGGGCTGAGCTGCGGTGCCTGCTTCGAGATAAAGTGCGCCAACGACCCCAGCTGGTGCCACGCTGGCAGCCCCTCCATCTTCGTAACCGCCACAAACTTCTGCCCCCCAAACTACGCTCTTCCGAACGACAATGGAGGATGGTGCAACCCTCCTCGGCCTCACTTCGACCTGGCCATGCCCATGTTCCTCAAAATCGCTCAGTACCGCGCCGGCATCGTCCCCGTCTCTTACCGCAGGGTGCCTTGCCGTAAGCAGGGAGGGATGAGGTTCACGATCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGACGAGCGTGAAAGGGTCGAAGACTGGGTGGATGAGCATGAGCCGCAACTGGGGTCAGAACTGGCAATCAAACGCTGTTCTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGACGCACCTCCACCTCCTGGAACCTCGTACCCGCCAATTGGCAATTTGGTCAAACATTCACCGGCAAAAATTTCAAAGTCTAA 774 0.5982 MPSLIAIVTLIAVVLTSTEARIPGAYSGGAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPSWCHAGSPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVKTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNLVPANWQFGQTFTGKNFKV* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2117 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Gso2g2117 257 SMART dpbb_1 66 153 IPR007112 -
Gso2g2117 257 Gene3D - 164 255 IPR036749 -
Gso2g2117 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Gso2g2117 257 Gene3D - 17 159 IPR036908 -
Gso2g2117 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Gso2g2117 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Gso2g2117 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Gso2g2117 257 PANTHER EXPANSIN-A6 4 256 - -
Gso2g2117 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Gso2g2117 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Gso2g2117 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Gso2g2117 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Gso2g2117 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Gso2g2117 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Gso2g2117 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Gso2g2117 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gso2g2117 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gso2g2117 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2117 Gso-Chr2 45754527 45756866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2117 1 257 Expansin Gene Family AT2G39700 83.268 5.64e-166 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2117 - - gmx:100803242 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0583 14 5691233 5693727 Gso2g2117 2 45754527 45756866 GST
Gso18g0331 18 3130452 3132480 Gso2g2117 2 45754527 45756866 PCT
Gso13g1284 13 28170444 28172697 Gso2g2117 2 45754527 45756866 PCT
Gso2g2117 2 45754527 45756866 Gso18g0331 18 3130452 3132480 PCT
Gso2g2117 2 45754527 45756866 Gso13g1284 13 28170444 28172697 PCT