Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2111 ATGCGTCGGAACAGCCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGCGGTGGTGGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTCCGGCAGGAGGGGGTTCGGTGGAGGCAGGCGCAGGGACAGCAATGGGAGCCTCTTGGTTCGTAACATTCCCCTCGATTGCAGACCCGAGGAGCTTCGCGTCCCTTTCGAGCGATTTGGACCTGTTCGTGACGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCCTTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACGAGAAAAAGACCAGAGGAGATGCGCCACAGGACTAGTAGGTTAAGAGGACCAGCGGGCTATGGAGGGCAAAGGTCTTCTCGTTACGGGCGTTCTCGATCTCGCTCAGTTACCAGATCACGCTCACCACCTTATCACTCTGGTTCTAGGAATCGATATCGCTCAAGGTCCTATTCGCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCTGAGCACCCCAGATCACCAAGAGGTCCTCCCAGGGAGAGGGATGGTGAACAGAAGCGTAGGTCTTATTCTCCTGCTTATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGATGCTGATCGTGGTCAGTGGAAGTCGTCGAGATCACCACCTGGATCTAGATCAAGATCTGCTGAATTGTCACCAAGGCGTGGAAGATGA 831 0.5259 MRRNSPAYYSPPRRGYGGGGRGGGGGGGGGGSGRRGFGGGRRRDSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTSRLRGPAGYGGQRSSRYGRSRSRSVTRSRSPPYHSGSRNRYRSRSYSPAPRRQSDYSVSPRRQAEHPRSPRGPPRERDGEQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSDADRGQWKSSRSPPGSRSRSAELSPRRGR* 277
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2111 276 MobiDBLite consensus disorder prediction 126 276 - -
Gso2g2111 276 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 28 274 - -
Gso2g2111 276 MobiDBLite consensus disorder prediction 195 221 - -
Gso2g2111 276 Gene3D - 39 182 IPR012677 -
Gso2g2111 276 MobiDBLite consensus disorder prediction 227 242 - -
Gso2g2111 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Gso2g2111 276 MobiDBLite consensus disorder prediction 152 194 - -
Gso2g2111 276 SMART rrm1_1 48 121 IPR000504 GO:0003723
Gso2g2111 276 MobiDBLite consensus disorder prediction 1 48 - -
Gso2g2111 276 SUPERFAMILY RNA-binding domain, RBD 44 154 IPR035979 GO:0003676
Gso2g2111 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Gso2g2111 276 PANTHER OS02G0252100 PROTEIN 28 274 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso2g2111 Gso-Chr2 45705970 45709522 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2111 30 109 Eukaryotic Initiation Factors Gene Family AT3G11400 38.272 2.59e-07 49.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2111 K12900 - gmx:100804294 446.817
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0588 14 5735430 5739002 Gso2g2111 2 45705970 45709522 GST