Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2109 ATGGGGTGCTGCTTAAGTGCCAGGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAACAAGGAAGAAGATGGCTTAAGCAGCAAGGCCTCAACTCCCTCTGTTCCTCCAACTCCGCGGACGGAGGGAGAGATCTTGAAGTCCTCAAACATGAAGAGCTTCAACTTCAGTGAGCTAAAAACTGCTACAAGAAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGCGGGTTTGGTTGTGTTTTTAAGGGGTGGATTGATGAACAGACACTTGCACCAGTTAGACCAGGGACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTTCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCGTCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGACGACCACCGGCTTTTGGTGTATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTATTTAGGAGAGCTTCTTACTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCGAATTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCTGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCTGCTCCTGAATATATGGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGCTTCGGGGTTGTTCTGCTGGAAATTATGTCTGGCAAACGAGCACTTGACAGCAACAGGCCAAGTGGGGAGCACAATTTAATTGAATGGGCCAAACCTTACCTCAGCAGCAAGCGCAGGATCTTCCAAGTCATGGATGCTCGCATAGAAGGCCAATACATGTTGCGCGAAGCAATGAAAGTAGCCACTCTTGCCATTCAATGCCTATCTGTGGAACCAAGATTTAGACCAAAGATGGATGAAGTGGTGAGAGCATTGGAGGAACTTCAGGATTCTGATGACAGAGTCGGAGGGGTGGGAAGCTCTCGTGATCAAACTACTAGAAGGAGTGGCCCTAGACAACATAGAGGTAGACAACATGAAACAACAAGGAAGTGA 1179 0.458 MGCCLSARIKAESPPRNGLSSKDGNKEEDGLSSKASTPSVPPTPRTEGEILKSSNMKSFNFSELKTATRNFRPDSVVGEGGFGCVFKGWIDEQTLAPVRPGTGMVIAVKRLNQEGLQGHSEWLTEINYLGQLRHPNLVKLIGYCLEDDHRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSSKRRIFQVMDARIEGQYMLREAMKVATLAIQCLSVEPRFRPKMDEVVRALEELQDSDDRVGGVGSSRDQTTRRSGPRQHRGRQHETTRK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2109 392 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Gso2g2109 392 Gene3D Transferase(Phosphotransferase) domain 1 157 371 - -
Gso2g2109 392 MobiDBLite consensus disorder prediction 1 52 - -
Gso2g2109 392 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2109 392 CDD STKc_IRAK 77 356 - -
Gso2g2109 392 SUPERFAMILY Protein kinase-like (PK-like) 48 355 IPR011009 -
Gso2g2109 392 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Gso2g2109 392 PANTHER OS01G0588500 PROTEIN-RELATED 22 388 - -
Gso2g2109 392 PANTHER KINASE 1B 22 388 - -
Gso2g2109 392 MobiDBLite consensus disorder prediction 31 52 - -
Gso2g2109 392 MobiDBLite consensus disorder prediction 360 392 - -
Gso2g2109 392 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Gso2g2109 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2109 Gso-Chr2 45693949 45699204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2109 15 353 Glycoside Hydrolase AT3G07070 47.414 1.22e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso2g2109 PK_Tyr_Ser-Thr 7.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2109 - - gmx:100800735 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0590 14 5747704 5752150 Gso2g2109 2 45693949 45699204 GST
Gso18g0336 18 3180851 3185026 Gso2g2109 2 45693949 45699204 PCT
Gso13g1281 13 28122558 28126479 Gso2g2109 2 45693949 45699204 PCT
Gso2g2109 2 45693949 45699204 Gso18g0336 18 3180851 3185026 PCT
Gso2g2109 2 45693949 45699204 Gso13g1281 13 28122558 28126479 PCT