Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2106 ATGAGAAAACCTTGTTGTGACAAGGAAAACATCAATAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGACTACATCCAAGTCCATGGTGAAGGCTGTTGGCGTTCCATTCCTAAAGCTGCTGGGCTGCATCGTTGTGGCAAAAGCTGTAGGATGAGATGGTTAAACTACTTACGACCAGGCATCAAACGTGGAATCTTTGCTGAAGATGAGGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGGTTGCCTGGGAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTAATAAAGATGGGAATTGATCCAAATAGCCATAAGCCACACCAAAGCTTTCCTCGTCCTCATGTTTCTTCTGCTGATCATCAGGGTGCATCAACATCTGAGTCCATCAACAACAACAAAGTCCCTTTCTTCAATTCCCGTGGTTCAGCTGCCACTGATCATCATAAGATTTCGTTCACTAAAGAAGAAACATCAATTATTTCATCACCCCCTTTGAATCTTGATCTTACAATTTCTTTACCTTCGCCTGTGGAAGAAAACAAAAATTCTGATCATGAGTCCGCCAAGACATGTGACGTGGATATAGATCTCAACTGTTAG 663 0.4299 MRKPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWRSIPKAAGLHRCGKSCRMRWLNYLRPGIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNSHKPHQSFPRPHVSSADHQGASTSESINNNKVPFFNSRGSAATDHHKISFTKEETSIISSPPLNLDLTISLPSPVEENKNSDHESAKTCDVDIDLNC* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2106 220 MobiDBLite consensus disorder prediction 135 160 - -
Gso2g2106 220 PANTHER MYB TRANSCRIPTION FACTOR 2 214 - -
Gso2g2106 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gso2g2106 220 CDD SANT 71 111 IPR001005 -
Gso2g2106 220 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso2g2106 220 SMART sant 12 62 IPR001005 -
Gso2g2106 220 SMART sant 65 113 IPR001005 -
Gso2g2106 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Gso2g2106 220 CDD SANT 15 60 IPR001005 -
Gso2g2106 220 Gene3D - 68 137 - -
Gso2g2106 220 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso2g2106 220 MobiDBLite consensus disorder prediction 121 161 - -
Gso2g2106 220 Gene3D - 13 65 - -
Gso2g2106 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 214 - -
Gso2g2106 220 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso2g2106 220 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Gso2g2106 220 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2106 Gso-Chr2 45660400 45662370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2106 2 212 MYB Transcription Factor Family AT4G38620 53.097 4.04e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g2106 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2106 K09422 - gmx:100306391 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0593 14 5781186 5783472 Gso2g2106 2 45660400 45662370 GST