Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2101 ATGGAAGGTTTTTCACCGGAGGCGGAGGCGACAGCGGTGGCCGTACGGCGGGCGTTGGAGCTGCTGCAGCTGAACGACCCCGTTTTGAGGGTCCAAGCGGCGAGGGACATCCGGCGCCTGACCAAGACCTCGCAGCGGTGCCGCCGCCAGCTCCGGCAAGCCGTGGCGCCACTCGTGTCCATGCTCCGCGTTGACTCGTCCGAGTTCCACGAACCCGCGCTTCTCGCTCTGCTTAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCAATAATTAGTTTCCTCAAGTCACCAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTCCAACCAACAAACCAATCATTAGTGCTTGTGGCACCATTCCTCTTCTTGTGAATATTCTAAGAGATGGAAGTCCTCAAGCTAAAGTTGATGCTGTGATGGCACTGTCCAATTTATCAACAACACAACCTGAAAACCTCAGCATCATTCTTGAAACAAATGCAATGCCTTTTATAGTTAGTCTTCTCAAAACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGCTCTGCTTTGATAGAATCCTTGGTGGGTTATGAAAAGGGAAGAATTTCCTTAACATCTGAAGAAGGTGGAGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGGACCCCCCAAAGTAGGGAACATGCTGTTGGGGCATTGCTGACTATGTGCCAAAGTGATAGATGTAAATATAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACAGTTCAAGGAACCCCCAAGTCTCAGCCAAAGGCACGTACCCTTTTGCAGTTACTAAGAGAGTCTCCATATTCAAGACCTAAAGCTGAACCTGACATTCTTGAGAACATAGTGTGTGACATCATATCACAGATTGATGGGGATGATCAATCTGGTAGAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAGCAAAGGGCTCTTGTATGTACCCCTAGTGAAATGCCTATTGCAAGTTGTGCTTCTGAAGTTTCTTCAAAATATTAG 1116 0.4677 MEGFSPEAEATAVAVRRALELLQLNDPVLRVQAARDIRRLTKTSQRCRRQLRQAVAPLVSMLRVDSSEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLKSPNPNLQEYATASLLTLSASPTNKPIISACGTIPLLVNILRDGSPQAKVDAVMALSNLSTTQPENLSIILETNAMPFIVSLLKTCRKSSKIAEKCSALIESLVGYEKGRISLTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQVSMEQSLRHLQQRALVCTPSEMPIASCASEVSSKY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2101 371 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 53 95 IPR000225 GO:0005515
Gso2g2101 371 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 136 178 IPR000225 GO:0005515
Gso2g2101 371 PANTHER U BOX DOMAIN-CONTAINING 6 353 - -
Gso2g2101 371 Pfam Armadillo/beta-catenin-like repeat 85 123 IPR000225 GO:0005515
Gso2g2101 371 SUPERFAMILY ARM repeat 15 317 IPR016024 -
Gso2g2101 371 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 95 132 IPR000225 GO:0005515
Gso2g2101 371 SMART arm_5 125 165 IPR000225 GO:0005515
Gso2g2101 371 SMART arm_5 44 82 IPR000225 GO:0005515
Gso2g2101 371 SMART arm_5 167 209 IPR000225 GO:0005515
Gso2g2101 371 SMART arm_5 84 124 IPR000225 GO:0005515
Gso2g2101 371 SMART arm_5 210 251 IPR000225 GO:0005515
Gso2g2101 371 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 353 - -
Gso2g2101 371 Gene3D - 3 354 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2101 Gso-Chr2 45628192 45632320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2101 15 293 U-box Gene Family AT2G23140 33.096 3.36e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2101 - - gmx:100798093 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0596 14 5821907 5826199 Gso2g2101 2 45628192 45632320 GST
Gso18g0344 18 3239599 3243738 Gso2g2101 2 45628192 45632320 PCT
Gso13g1273 13 28017931 28022205 Gso2g2101 2 45628192 45632320 PCT
Gso2g2101 2 45628192 45632320 Gso18g0344 18 3239599 3243738 PCT
Gso2g2101 2 45628192 45632320 Gso13g1273 13 28017931 28022205 PCT