Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2100 ATGGCACTCTCTTTGACATCTAATGGGGTCAATGAGTACCAAAAATGTGTGGTTGAAGAGGAAGATGGCTCACAAAGTACTAATGGGCTCAGCAATGATTCAGCTTCAGCCATAACCCATTCTCCTCCTCTATGTAGCAATAGCAATGAGTATGTTCATAATAAGAGCACACATTACCAACTTGAAGAAGCAGAATCTCTGATTAACTTCAAAGCCAATGAGTACAACACCCTCATACAAGGTAGTGAATCTTTTCTTAGCGTTCAGAAGAGTTGGCTGTTCCCCAAAGAGAGTAATTTGCATGAAGGTTATAACCAATGGAACCATGCTATTAGTCCAAAAAGCACCACAGATATGCGCCTAGTGCAAAATTTCAGTTGCTTTGAAACTTCCGCTGGCTATAGTTCCATATTCAATGGTGCAAAAGAGAAGCAACATGGTGAAAGTTCATCATCTGGGTGGCTATACTCTGAACCAAATGTCCCTAGCGATAGCCTGCTTGAGTCAGCAGCACAAGAGTTGGTCTTGACAAAACGCTCTTCTATGGGAGAGAATATGCAAGCTACCAATGCCAAGAAGCCATGCACAAGTGCGAGTAAAGCAGCAAAACCAAAGTTAAACCCATTCAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTACAAGAACTGGTCCCCAACGGTTCCAAGGTTGATTTGGTCACAATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTCCAAGGTGGAAAAGCCCCAGACATTTCTCAAGTGAGACAAGCCATCGATGCTATTCTTTCATCTCAAAGATGA 888 0.4234 MALSLTSNGVNEYQKCVVEEEDGSQSTNGLSNDSASAITHSPPLCSNSNEYVHNKSTHYQLEEAESLINFKANEYNTLIQGSESFLSVQKSWLFPKESNLHEGYNQWNHAISPKSTTDMRLVQNFSCFETSAGYSSIFNGAKEKQHGESSSSGWLYSEPNVPSDSLLESAAQELVLTKRSSMGENMQATNAKKPCTSASKAAKPKLNPFKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2100 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 267 IPR036638 GO:0046983
Gso2g2100 295 CDD bHLH_AtIND_like 210 271 - -
Gso2g2100 295 MobiDBLite consensus disorder prediction 185 218 - -
Gso2g2100 295 Pfam Helix-loop-helix DNA-binding domain 218 258 IPR011598 GO:0046983
Gso2g2100 295 MobiDBLite consensus disorder prediction 20 39 - -
Gso2g2100 295 Gene3D - 209 265 IPR036638 GO:0046983
Gso2g2100 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
Gso2g2100 295 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 293 - -
Gso2g2100 295 SMART finulus 214 263 IPR011598 GO:0046983
Gso2g2100 295 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2100 Gso-Chr2 45611759 45613603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2100 61 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 49.174 3.49e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g2100 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2100 - - gmx:100803231 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0597 14 5837411 5839252 Gso2g2100 2 45611759 45613603 GST
Gso18g0345 18 3263014 3264820 Gso2g2100 2 45611759 45613603 PCT
Gso13g1271 13 28001402 28003392 Gso2g2100 2 45611759 45613603 PCT
Gso2g2100 2 45611759 45613603 Gso18g0345 18 3263014 3264820 PCT
Gso2g2100 2 45611759 45613603 Gso13g1271 13 28001402 28003392 PCT