Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2089 ATGGCCACTGAAGAGGTTAACAAACCTCAATCACTTCCTCCATACCCTGAGATGATAGTGAAAACACTTGAAGCACTGAATGAGCCAAATGGATCGAACAAGTCAGCAATATCAAAGTACATAGAAACCACCTACGGTGAGTTGCCAGACGCAACCGTTTTGGGGAGTCACCTTAACAAGATGAAAGACAGTGGAGAGCTTTCTTTCAAACAGAACAATTACATGAAAGCTGACCCAAATGCCCCACCAAAGAGGGGCCGTGGAAGGCCACCAAAGCCAAAGACTCCATTGCCACCAGGCACTGTTGTGTCCCCTCCAAGGCCAAGGGGTCGTCCCCCAAAAGACCCTAATGCCCCTCCTAAGTCTCCCAAGGCTAAGGCCACCCCTGGAAGTGGCAGGCCAAGAGGAAGGCCTAAGAAGGTTCCTCGGTCTCCGGCCGTCGCCGCTCCGACCGCCGTCTCCAGTGGCAGGCCTCGAGGTAGGCCTCCCAAGGTGAAGCCTCAGTTGACAGAAGTCAGTGTTGAGTCATAG 531 0.5292 MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDATVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVES* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2089 176 MobiDBLite consensus disorder prediction 64 176 - -
Gso2g2089 176 SUPERFAMILY "Winged helix" DNA-binding domain 8 85 IPR036390 -
Gso2g2089 176 Gene3D - 7 87 IPR036388 -
Gso2g2089 176 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677
Gso2g2089 176 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Gso2g2089 176 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Gso2g2089 176 MobiDBLite consensus disorder prediction 92 123 - -
Gso2g2089 176 Pfam linker histone H1 and H5 family 13 61 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g2089 176 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Gso2g2089 176 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Gso2g2089 176 SMART AT_hook_2 156 168 IPR017956 GO:0003677
Gso2g2089 176 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Gso2g2089 176 PANTHER HISTONE H1 1 172 - -
Gso2g2089 176 PRINTS High mobility group protein (HMGY) signature 82 94 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso2g2089 176 PRINTS High mobility group protein (HMGY) signature 97 108 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso2g2089 176 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso2g2089 176 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso2g2089 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g2089 176 PANTHER HMG-Y-RELATED PROTEIN A 1 172 IPR031059 GO:0003677|GO:0005634
Gso2g2089 176 SMART h15plus2 9 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2089 Gso-Chr2 45497008 45498543 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2089 - - gmx:548080 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1813 14 50501871 50503281 Gso2g2089 2 45497008 45498543 GST
Gso18g0355 18 3397681 3399002 Gso2g2089 2 45497008 45498543 PCT
Gso13g1258 13 27833555 27834891 Gso2g2089 2 45497008 45498543 PCT