Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2085 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATAAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGGCTTTTAAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGACAAATTACTTGAGGCCAGACTTAAAGAGAGGTCTTTTATCAGAATACGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAATCATTGGAACACACACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGCCACACATAAACCACTTCCTAATGCAAATGAACAAAACCAAAATCAAACCAGACAAGATCAACAACTACACCACCAACCAGTAGAATTAGAAGAGCCTAACCAACAACCTTTGCAAGTTGACTTTGACCCCAAAGTTGACCCAAATAAGGAGCCAGAGAAGCCAGAGACTTCATTGGAATCATCAACCATCACTGAAGAAGCCAAAGAGGAAGACCAAATCATAACACCCTTATTTGACACAATGGAGCTAATGAATGGTTTCTGCACAGATGAAGTTCCAATAATTGAACCTCATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCACCTCTTCATCATCTTCTTCAAATTCAACCAATTTTCTTGAAGACTTGCAGCTACCAGATTTTGAATGGTCTTGTAATTACAATGATAATAACACTATTACTAACAATAACAACAATGAAGACAAAGACGACGACAACAACAACAATAGCAGCATGGCCTTGTGGGATGATGACATTATTGGCAACCGTTATTGGCTGATTAATGAAGATGATGATAGTGATGAAAACCAAGTGTTTGATGCTTCTCTCACTCAATTCTCAAAAATGTTCATGGAATCAGAATCTTGGGGATATGGCTTATTTTGA 1011 0.4006 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPATHKPLPNANEQNQNQTRQDQQLHHQPVELEEPNQQPLQVDFDPKVDPNKEPEKPETSLESSTITEEAKEEDQIITPLFDTMELMNGFCTDEVPIIEPHEILMPCAPSSSSTTSSSSSSNSTNFLEDLQLPDFEWSCNYNDNNTITNNNNNEDKDDDNNNNSSMALWDDDIIGNRYWLINEDDDSDENQVFDASLTQFSKMFMESESWGYGLF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2085 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso2g2085 336 CDD SANT 16 61 IPR001005 -
Gso2g2085 336 MobiDBLite consensus disorder prediction 129 156 - -
Gso2g2085 336 MobiDBLite consensus disorder prediction 121 195 - -
Gso2g2085 336 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso2g2085 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso2g2085 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso2g2085 336 PANTHER MYB TRANSCRIPTION FACTOR 1 309 - -
Gso2g2085 336 Gene3D - 70 149 - -
Gso2g2085 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso2g2085 336 CDD SANT 74 112 IPR001005 -
Gso2g2085 336 Gene3D - 11 67 - -
Gso2g2085 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso2g2085 336 SMART sant 66 114 IPR001005 -
Gso2g2085 336 SMART sant 13 63 IPR001005 -
Gso2g2085 336 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 309 - -
Gso2g2085 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2085 Gso-Chr2 45442972 45445514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2085 1 259 MYB Transcription Factor Family AT1G66230 60.536 2.99e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g2085 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2085 K09422 - gmx:100792103 628.632