Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2072 ATGACGGGGAAGAAGAATGTGAAGGCGATGACCACGGCGGAAGAGGAAGATGATCAGGGGAAGCACACGACGTCGTCTTCGTTTTCGTCTTCTTCTTCGCCGTCGTCGTCTTCGGACGAGAGAGAGTACGAGGTGCAGGACCTGCGTGACCGGTTGAAATCGTCGCAAGGGAGCATGTTCAATCTGATAGAGAACCAGTTGGGACTCAACTCGACTTGGAGCAAGTTCAGTCGCCAAGCTCTTCTCCATGGAATCCGAGGCTTCTCCATGGACTTAGTTAAAGACTTCGTTATTCATCCTGATAACAGGTGGTATCGGGCATGGACAAATTTCATATTGGTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGGTTTTTCCGTGGCTTGCCTGAGAATCTCTTTATACTGGACATCATTGGACAAATAGCTTTTCTTGTAGATATTGTCTTGCAATTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGTATGGTCTACAAGAGAACCCCTATTGCTCTGCGGTATCTGAAATCTAACTTCATATTTGATCTTCTTGGATGTATGCCCTGGGACATCATCTACAAGGCTTGTGGAAGAAAAGAGGAAGTGAGGTACCTTTTGTGGATCAGATTATATAGGGTGCGGAAAGTCGAAGACTTTTTCCACAAGTTGGAGAAGGACATACGTGTCAATTACATTATTACCCGGATTGTGAAACTGATAGTAGTTGAACTCTACTGCACCCATACAGCAGCCTGCATTTTCTACTATTTAGCTACTACACTACCTGAATCCCAAGAAGGGTACACATGGATAGGAAGTTTAAAACTAGGTGACTTTAGTTATTCACATTTCAGAGAAATTGATCTTTGGAAGCGCTATACAACATCTCTGTACTTCGCTATTGTTACAATGGCTACAGTTGGCTATGGAGATATGCATGCAGTAAATATGAGGGAGATGATATTCATAATGGTATATGTTTCATTTGATATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAAGATGACAGACCTTATGAAATATATGAACAGAAATAGGCTCGGAAGGGATATCCGTGAACAAATAAAAGGTCATGTGCGGTTACAGTATGAGAGTAGCTACACTGAGGCTTCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAGATATCCCAAACATTATATTTGCCGTACATTGAAAAGGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTATTAGGCTCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTATGTCATGGAGTACTGGAGGAAGTAGGCATAGCTGAAGATGGGACTGAAGAAACTGTTTCACTTCTGCAGCCTAACAGTTCATTCGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGTGTTTGTGAACTGGGTAGACTCCTGCGACTTGATAAACAATCATTTACAAATATCCTAGACATATACTTTTATGATGGAAGGAAAGTGTTATACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGATAAGCAGTTGGAGTCAGACATCACATTTCATCTTGGAAAGCAAGAAGCTGAGCTTGCTTTGAAGGTCAATAGTGCAGCTTTCAATGGGGATATGTATCAGCTAAAAGGTTTAATTCGAGCAGGAGCTGATCCCAACAAGGCAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATCACAATTTTCCTTATTCAAGAACGTGTAGATGTCAATATTATAGATAACTTCGGGAACACACCCTTACTTGAAGCAGTTAAGAATGGACATGATCGGGTTGCTTCTTTACTTGTTAAAGAAGGGGCCTCTATGAAGATCGAAAATGCTGGTAGTTTTTTGTGTACTGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAGGATTATGATTACCGAAGTCCTCTTCACGTTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCCGGAGCTAGTGTTTTTACACGAGACAGATGGGGAAATACCCCGCTTGATGAAGCTCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGATGCAAAATCTTCTCAACTGTCAGAATTTCCATCCCAAGAATTTACAGATAAAATGCATCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTATTATGGATTCCACACTCTATCGAAGAGCTAATCAAATCAGCAGCAGAACAAATAGAAATTTCTGGCGGTTCTTGTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATCAAGGATGGTCAGAAGCTGTATTTAGTCCATGAAACACATTAG 2550 0.4071 MTGKKNVKAMTTAEEEDDQGKHTTSSSFSSSSSPSSSSDEREYEVQDLRDRLKSSQGSMFNLIENQLGLNSTWSKFSRQALLHGIRGFSMDLVKDFVIHPDNRWYRAWTNFILVWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRVRKVEDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDMHAVNMREMIFIMVYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEASVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELGRLLRLDKQSFTNILDIYFYDGRKVLYNLLEGKESFRDKQLESDITFHLGKQEAELALKVNSAAFNGDMYQLKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDNFGNTPLLEAVKNGHDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHVAAAEGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGNKNLIKLLEDAKSSQLSEFPSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAEQIEISGGSCILSEDAGKITDVDMIKDGQKLYLVHETH* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2072 849 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Gso2g2072 849 Gene3D Jelly Rolls 410 546 IPR014710 -
Gso2g2072 849 ProSiteProfiles KHA domain profile. 776 849 IPR021789 -
Gso2g2072 849 Gene3D - 107 352 - -
Gso2g2072 849 Pfam KHA, dimerisation domain of potassium ion channel 775 844 IPR021789 -
Gso2g2072 849 PANTHER POTASSIUM CHANNEL AKT1 35 848 IPR045319 GO:0005249|GO:0006813
Gso2g2072 849 MobiDBLite consensus disorder prediction 23 39 - -
Gso2g2072 849 ProSiteProfiles Ankyrin repeat region circular profile. 699 731 - -
Gso2g2072 849 ProSiteProfiles Ankyrin repeat region circular profile. 635 666 - -
Gso2g2072 849 CDD CAP_ED 426 540 IPR000595 -
Gso2g2072 849 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Gso2g2072 849 ProSiteProfiles cAMP/cGMP binding motif profile. 426 529 IPR000595 -
Gso2g2072 849 Pfam Ion transport protein 106 351 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso2g2072 849 Gene3D Helix hairpin bin 353 409 - -
Gso2g2072 849 Gene3D - 668 762 IPR036770 -
Gso2g2072 849 PRINTS EAG/ELK/ERG potassium channel family signature 141 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso2g2072 849 PRINTS EAG/ELK/ERG potassium channel family signature 250 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso2g2072 849 PRINTS EAG/ELK/ERG potassium channel family signature 298 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso2g2072 849 PRINTS EAG/ELK/ERG potassium channel family signature 342 351 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso2g2072 849 Pfam Ankyrin repeats (3 copies) 577 665 IPR002110 GO:0005515
Gso2g2072 849 Pfam Ankyrin repeats (3 copies) 672 752 IPR002110 GO:0005515
Gso2g2072 849 PANTHER POTASSIUM CHANNEL SKOR-LIKE 35 848 - -
Gso2g2072 849 Pfam Cyclic nucleotide-binding domain 446 530 IPR000595 -
Gso2g2072 849 SMART cnmp_10 426 544 IPR000595 -
Gso2g2072 849 Gene3D - 559 667 IPR036770 -
Gso2g2072 849 SUPERFAMILY cAMP-binding domain-like 354 543 IPR018490 -
Gso2g2072 849 SMART ANK_2a 732 761 IPR002110 GO:0005515
Gso2g2072 849 SMART ANK_2a 635 664 IPR002110 GO:0005515
Gso2g2072 849 SMART ANK_2a 666 695 IPR002110 GO:0005515
Gso2g2072 849 SMART ANK_2a 602 631 IPR002110 GO:0005515
Gso2g2072 849 SMART ANK_2a 699 728 IPR002110 GO:0005515
Gso2g2072 849 ProSiteProfiles Ankyrin repeat region circular profile. 602 634 - -
Gso2g2072 849 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Gso2g2072 849 SUPERFAMILY Ankyrin repeat 575 754 IPR036770 -
Gso2g2072 849 MobiDBLite consensus disorder prediction 1 44 - -
Gso2g2072 849 SUPERFAMILY Voltage-gated potassium channels 99 351 - -
Gso2g2072 849 PRINTS Ankyrin repeat signature 603 618 IPR002110 GO:0005515
Gso2g2072 849 PRINTS Ankyrin repeat signature 715 729 IPR002110 GO:0005515
Gso2g2072 849 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2072 Gso-Chr2 45310961 45320417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2072 673 758 Ion Channels AT5G37500 33.333 2.20e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2072 K21867 - gmx:100797927 1692.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1795 14 50277617 50288058 Gso2g2072 2 45310961 45320417 GST