Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2071 ATGTCTTTCGCTCTCATCGAAGCCTGCAAGAAGCGTAAACGGTTGCCGAAGTTTTTCAGGTTCAACTCGTTCGGCGACCCTGGTGTTGTTCCAATTGCACGTTCGGGTCCCTTCCGCGATAACGTTCGCGTTTTCCTTCAAGAAGCTGGCGATCTCGAAGACTACACTGTCTCCGGGAACCCCCTCTGGTGCATTCTTCTCATCCACGACAACTCGTACGCTATGGCTCCTCTTTACACCATCGAAGAACACGTCGACCACTCTTCGCACCCCTTCTGCGATCACTGCCGCTGCGTAGGTTGGAGTGGACATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCCATGGACAATGGGTGGCATAAACCCTTAGATGAAGATTCAATAGACAATGAGAAGCATCTGCTGCATGGAGTGATTCATTGCAATGGGTATGGTCATTTGCTTTGTGTCAATGGCATTGAAGAAGGCTCCAAGGTTCTTAGTGGCAGAGAGATCATGGATCTTTGGGATAGGATATGCACAAACCTCCGAGTGAGGAAGATTGCAGTGGAAGATGTTTCTTGTAAGAGGTCTATGGATCTTCGCTTACTTCATGGAGTTGCTTATGGACACTCCTGGTTTGGTAGGTGGGGTTATAGGTTTTGCCGTGGAAGCTTTGGAGTGACAGAGCGAGAATACAATGAAGCAATGACAACGCTTGGTTCCTTGGGGCTTGACGTGATTGTAAAAGATTTGAGCAAGACAAAGACAAAGTACAAGGCAGAAATCAAGCAAATTATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTCACTGTCAAGTCTTCTCGTGCTCCTGTGCCTAAGATAACAGACACTTATTCTGCTGCTGCTGATTCTACTTCTTCAGCATTAACCTCAAGAAATTCAACCAAACACACACTTCCAAACAGATCAAATTCCATGAAGGATAAATCTGTGAGGTACAAGAAGTTCAGCAATGCAGTGACTAGCATAGATAGCAGGTGGCCCACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAGGCTGTGAAACCAGGCTCAGGTGGGATGACAAGGCAAGATGTGAGAGATGCAGCTAGGATACACATTGGTGACACAGGCTTACTCGATTATGTGCTTAAATCACTCAACAATGTGATTGTTGGAAACTATGTTGTTCGTCGCATGGTGAATCCAACAACTAGAATCTTAGAGTACACTATTCATGATCTTGGCAAGGGGTTAAAAGCCCCTGAAGTGGAGACTGAAGTGATGGCTCATGTAGATCAACAAGTAGAAGAGTCATCTTGGAAGCCTGGTAATGATGTATACTGTGATGCATTGTTTTTGTACAAGAATGTGCTATTGAGTTACCCTGATTCAGAAGCAGTGGACACAGCAGTTCAGACAATTCTAGACAGCAGATACTTTGTGAAGGAGTGGCCAGTAAGGGATGAAATAAAGGAGCAGGTATTGACATTCATTTGCCGCTTGCAACCAAATTTTGTGGACAAAAAACATGAGCTGAAAGGTGTAGCATGTGGTGAGATTGTAGTGGTTCCACTGCATGCAACAGTTGGTGACTTGAAGAGAGCTTCAGAGGCTGCTCTGAGGGACACTTACTGCATTGCAGAGAGTCTTATAGTGACAGACATCAAAGAACTCATGGATGTGAGTGATGAGGAAGTATTGTTTGGATTAATCCAGTCTGGTGTGGAACTTTGTGTGAGGGGAATTGCAATTGATTTGTTGACCCCTTTGAAGTATGAGGGTGGATCTGAATCTGACAACTGGAAGGTGAGGTGTGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTATGGCAGCACACTCGGTGCTGTGGCATTGATGATTCTGAGACAGTGCCACCACTGTTTGTGTGCACTGGTTGCTGTGACTCCGTACTAGTACCTTCTTCAAGGACTGAATCAACAGTCTTTGGTGTGGATTCTGCCGATTCTTTTCTCATTTCAGAAGACTCTACCCTTTTACTAGGATACGAGTATGGATACTAA 2124 0.4473 MSFALIEACKKRKRLPKFFRFNSFGDPGVVPIARSGPFRDNVRVFLQEAGDLEDYTVSGNPLWCILLIHDNSYAMAPLYTIEEHVDHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNGWHKPLDEDSIDNEKHLLHGVIHCNGYGHLLCVNGIEEGSKVLSGREIMDLWDRICTNLRVRKIAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEREYNEAMTTLGSLGLDVIVKDLSKTKTKYKAEIKQIIRCYRDMSETHIISLRDLLRFMLTVKSSRAPVPKITDTYSAAADSTSSALTSRNSTKHTLPNRSNSMKDKSVRYKKFSNAVTSIDSRWPTRRLEFAAQVIVDALKENKAVKPGSGGMTRQDVRDAARIHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPTTRILEYTIHDLGKGLKAPEVETEVMAHVDQQVEESSWKPGNDVYCDALFLYKNVLLSYPDSEAVDTAVQTILDSRYFVKEWPVRDEIKEQVLTFICRLQPNFVDKKHELKGVACGEIVVVPLHATVGDLKRASEAALRDTYCIAESLIVTDIKELMDVSDEEVLFGLIQSGVELCVRGIAIDLLTPLKYEGGSESDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSVLVPSSRTESTVFGVDSADSFLISEDSTLLLGYEYGY* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2071 707 MobiDBLite consensus disorder prediction 307 329 - -
Gso2g2071 707 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Gso2g2071 707 SMART PHD_3 622 668 IPR001965 -
Gso2g2071 707 MobiDBLite consensus disorder prediction 307 328 - -
Gso2g2071 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Gso2g2071 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Gso2g2071 707 SUPERFAMILY FYVE/PHD zinc finger 610 673 IPR011011 -
Gso2g2071 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 671 IPR013083 -
Gso2g2071 707 CDD PHD_MMD1_like 623 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2071 Gso-Chr2 45304725 45308015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2071 10 676 PHD Transcription Factor Family AT5G22260 34.410 8.81e-121 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2071 - - gmx:100797388 1442.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1794 14 50268221 50271766 Gso2g2071 2 45304725 45308015 GST