Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2069 ATGGTTTTGTCATGGACAAAAGGGAGAGTGTTCCGGCGTGCCAGAAAGGGGAAAGAGTTGAAAAATTTCGGTGGCGACTTGGAGATAGACATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACATTGGACATGATGAAGGACCCCGTGACCGTTTCCACGGGCATAACCTACGACCGCGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTCACCAAAACGGAGTTGACAACCTTCGACATGATCCCGAACCACGCCATCCGTAGGATGATCCAGGACTGGTGCGTGGAGCACCGTTCCCACGGCATCGAACGGATCCCCACTCCTCGTATCCCCGTCACCCCGTACGAGGTTGCTGACACGTGTACGAGGATCTTGTCGGCGGCGCAACACGGGGACGAGAACAAGTGCGTGGAGTTGGTGAGCAAAATTAAAGCGTGGGGAAGGGAAAGTGAGAGAAATAAGAGATGCATAGTTTCTAACGGTGCTGCTTTAGCACTAGCGAACGCTTTCAACTCTTTCTCATCGCGTGGGTTGTTAATTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGTGCTTTGGTATGGATGCGTCCTCTTTCTGAAGAGGGTAGATCCGTGTTGGGGTCATCGAGTTCTATCTCTTGCATGGTTTGGTTCATGAACGGTAAACAATTATCCACAAGGCAAAACGCTGCTTTGGTTCTTAAGGAAATGCATGTTGAGGCTTTGGTGAAATGTGTAGGAGTTTTTGAGGCTTTGATTAACATGATTAAGGAGCCTGTTGGGAGTGGTTCCACCAAGGCCTGCTTGTCAACGATTTTCAACTTGGTTAATAATAAAAGAGGCGTGACGACTTGTCAAAGGTTTGTGGAATTGGGTTTGGTTGATGTGGTGTTGGAGGTTCTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATAGCGTTTGTGATTGCAAGCAAGGGGTGGAGATGGCAAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTCTTGAGGGTGTCTGAGTTGTGTTCAAGCTTCGCGGTTTCGGTTCTTTGGAAGCTTTGTGACAAGAATATTGAAGAAGGGGTGTTGATTGAGGCGCTTCAAATGGGGGTGTTTCATAAACTACTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGAACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTGTTGAATAGTTGCAGGAGCAAAGCTGAGTGTGTTCATCATTCTTCGTTGGATTTCAAGCATTTGAAGAATCCCTTCTAA 1317 0.4875 MVLSWTKGRVFRRARKGKELKNFGGDLEIDIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTTFDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVADTCTRILSAAQHGDENKCVELVSKIKAWGRESERNKRCIVSNGAALALANAFNSFSSRGLLIEKNVVVLDEILGALVWMRPLSEEGRSVLGSSSSISCMVWFMNGKQLSTRQNAALVLKEMHVEALVKCVGVFEALINMIKEPVGSGSTKACLSTIFNLVNNKRGVTTCQRFVELGLVDVVLEVLVDAERGVCEKALGVLDSVCDCKQGVEMAKANALTLPLVIKKLLRVSELCSSFAVSVLWKLCDKNIEEGVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNSCRSKAECVHHSSLDFKHLKNPF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2069 438 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
Gso2g2069 438 Gene3D - 124 424 IPR011989 -
Gso2g2069 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
Gso2g2069 438 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Gso2g2069 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 438 - -
Gso2g2069 438 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Gso2g2069 438 PANTHER WDSAM1 PROTEIN 5 438 IPR045185 GO:0061630
Gso2g2069 438 SUPERFAMILY RING/U-box 30 109 - -
Gso2g2069 438 SUPERFAMILY ARM repeat 128 414 IPR016024 -
Gso2g2069 438 CDD RING-Ubox_PUB 37 78 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2069 Gso-Chr2 45294522 45296197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2069 28 438 U-box Gene Family AT5G37490 46.172 2.37e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2069 - - gmx:100790182 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1793 14 50262357 50263968 Gso2g2069 2 45294522 45296197 GST
Gso18g0372 18 3619921 3621549 Gso2g2069 2 45294522 45296197 PCT
Gso13g1243 13 27576514 27578234 Gso2g2069 2 45294522 45296197 PCT
Gso2g2069 2 45294522 45296197 Gso18g0372 18 3619921 3621549 PCT
Gso2g2069 2 45294522 45296197 Gso13g1243 13 27576514 27578234 PCT