Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2066 ATGAAACCAAACTTTGATCTTGAAGTGGAGGCATGTGCAGCATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTATCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGTCTCACTAACATTTCCAACATCACAAATCCAATAGGGATTCATCCTAATTCAGATGCTATTTCACTTGACTTAAGTCTCAACTTCAAGAATAGTGCGCCAGGGGGAAGAGATTCAATAGGATTCTCCTTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCCGCACAAACTACAGCAGCAACCATTCCACGAGTCTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGTTCTCAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGGACATTAGCAAAAAGGGCTATGAGAATGGGATTTTTCTCTGAAAGGTACGCCAATCTAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCGCACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGTGTCCTGAGATAAAGAACAATGCAAGATTTGATCAAGGGTATGTTGGCCACCCGATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCTGGTAGTTTTCGTCAAGTTGCTGAGGCAGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAAATTTGAGTTTTACTGAGGTGAATCCACCTGTAGACATAGATAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4289 MKPNFDLEVEACAAYESEVSSQVASNVSIQETSIGPCSDSLTNISNITNPIGIHPNSDAISLDLSLNFKNSAPGGRDSIGFSFSSTSESSNEPAAQTTAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYANLASLPLHGSFRSLGIKAHSSLHHGFSPTMRCPEIKNNARFDQGYVGHPIFLEDDESDLLWPGSFRQVAEAGDSHQNFILTGSSNLSFTEVNPPVDIDNSTPDLTLKL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2066 257 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 257 - -
Gso2g2066 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Gso2g2066 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Gso2g2066 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Gso2g2066 257 Gene3D Classic Zinc Finger 85 151 - -
Gso2g2066 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 257 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2066 Gso-Chr2 45263531 45267206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2066 88 257 C2H2 Transcription Factor Family AT1G66140 52.041 1.93e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g2066 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2066 - - gmx:100788768 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1791 14 50222777 50225927 Gso2g2066 2 45263531 45267206 GST
Gso18g0374 18 3650007 3653352 Gso2g2066 2 45263531 45267206 PCT
Gso13g1242 13 27534443 27537920 Gso2g2066 2 45263531 45267206 PCT
Gso2g2066 2 45263531 45267206 Gso18g0374 18 3650007 3653352 PCT
Gso2g2066 2 45263531 45267206 Gso13g1242 13 27534443 27537920 PCT