Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2054 ATGGTTCTGTCCAAAACCGCCTCGGAGACAGACGTCTCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAGGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATACACGACGAGCTGATGCTGGACGGGAATCCGAGGCTGAACCTGGCGTCGTTTGTGACGACGTGGATGGAACCTGAATGTGACAAACTCATCATGGCTGCCATTAACAAAAATTACGTCGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAACCGGTGTGTTAACATGATAGCTCACCTTTTCAATGCACCACTAGAAGAGTCAGAAACTGCAGTTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATAATGTTGGCTGGGTTGGCATTCAAAAGGAGATGGCAGAATAGAAGGAAACTGGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCAGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTCTGAATGGAGAGTTTGAAGATGTCAAACTCTTAAATGATCTCCTGGTGGAAAAGAATAAGGAAACTGGATGGGACACTCCAATTCATGTGGATGCTGCCAGTGGGGGATTCATTGCACCTTTTCTTTATCCAGAGCTTGAATGGGACTTTCGGTTGCCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTTTAGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGACTGGGTTATGAGGGATATAAAATGGTGATGGAAAACTGCAATGACAACATGGCAGTGCTTAAGGAAGGACTGGAGAAAACAGGAAGGTTTGAGATTATATCCAAAGACATTGGTGTTCCATTGGTGGCCTTCACATTGAAGGACCACACCCACTTCAATGAATTCCAAATCTCTGACATGCTGAGGCGCTATGGTTGGATAGTGCCAGCATACACAATGCCCCCAGATGCACAACATGTGACAGTGCTTCGTGTTGTGATTAGGGAGGATTTTTCTCGCACCCTCGCGGAGCGTCTAGTGATTGATGTCACCAAAGTTGTGCACGAGCTGGATCTCCTTCCTGCTAGGGTGATCAGCACCAACACCATAATGGTTACAGGAGAAGCAGGTGAAGAAAATGACGAAAAAGTGCTGTTTGCCAAGAAGAGTGAAATAGAAACACAAAGGGAAATCACTAAAGCTTGGAAGAAGTTTGTGATGGACAGGAAGAAGATGAATGGTGTTTGTTAG 1512 0.4649 MVLSKTASETDVSVHSTFASRYVRTSLPRFKMAEESIPKEAAYQIIHDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRRWQNRRKLEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKMVMENCNDNMAVLKEGLEKTGRFEIISKDIGVPLVAFTLKDHTHFNEFQISDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVIDVTKVVHELDLLPARVISTNTIMVTGEAGEENDEKVLFAKKSEIETQREITKAWKKFVMDRKKMNGVC* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2054 503 Gene3D - 361 448 - -
Gso2g2054 503 Gene3D - 1 65 - -
Gso2g2054 503 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Gso2g2054 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 - -
Gso2g2054 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gso2g2054 503 Gene3D - 66 360 IPR015421 GO:0003824
Gso2g2054 503 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gso2g2054 503 Pfam Pyridoxal-dependent decarboxylase conserved domain 39 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2054 Gso-Chr2 45155732 45162282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2054 1 503 Calmodulin-binding Proteins AT5G17330 84.722 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2054 K01580 - gmx:100787167 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0384 18 3785792 3796509 Gso2g2054 2 45155732 45162282 PCT
Gso2g2054 2 45155732 45162282 Gso18g0384 18 3785792 3796509 PCT