Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2049 ATGTTGGCACTCACACTATCCATTCTCATCATCGCTACACTCTCTTCTTCGCCACTAGTCACCTCTCACTACTCCTCTTCCACTCTCGAGTCCCCTCCTTCTTCTCTAGAAGCCTCCCCGACCTTCTCCGAATGGCGATCCGCGCGCGCCACCTACTACGTCGCGGCGGATCCCCGCGACGCGGTGGGCGGCGCGTGCGGCTACGGCGACCTGGTTAAGGGCGGCTACGGCATGGCCACGGTGGGGCTCAGCGAGGCCCTGTTCGAGCGCGGCCAGATCTGTGGCGCGTGCTTCGAGCTCCGCTGCGTCGAGGACATGCGCTGGTGCATCCCCGGCACCTCCATCATCGTCACCGCCACCAACTTCTGCGCCCCCAACTACGGCTTCACCTCCGACGGCGGCGGACACTGTAACCCTCCCAACAAGCATTTCGTTCTCCCCATCGAAGCTTTTGAGAAGATCGCCATTTGGAAAGCCGGCAACATGCCCGTGCAGTATCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATGCGATTTACTGTTACTGGTTCTGGAATCTTCATTTCAGTGCTGATCAGTAATGTTGCTGGCCACGGAGACATAGGGGAGGTGAAGGTTAAAGGCTCCAGAACCGGTTGGCTTTCAATGGGTCGGAATTGGGGGCAAAACTGGCATGTAAATGCGTTGCTGCAAAACCAGCCTCTTTCGTTCGAGGTTAAAGCTAGTGATGGCAAAACGGTTACTTCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGA 813 0.5609 MLALTLSILIIATLSSSPLVTSHYSSSTLESPPSSLEASPTFSEWRSARATYYVAADPRDAVGGACGYGDLVKGGYGMATVGLSEALFERGQICGACFELRCVEDMRWCIPGTSIIVTATNFCAPNYGFTSDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGMRFTVTGSGIFISVLISNVAGHGDIGEVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVKASDGKTVTSYNVAPKDWTFGQTFEGKQFET* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2049 270 PANTHER EXPANSIN-A13 24 269 - -
Gso2g2049 270 SMART dpbb_1 80 166 IPR007112 -
Gso2g2049 270 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Gso2g2049 270 Pfam Lytic transglycolase 81 166 IPR009009 -
Gso2g2049 270 Gene3D - 176 268 IPR036749 -
Gso2g2049 270 Gene3D - 30 172 IPR036908 -
Gso2g2049 270 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 102 113 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 115 125 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 134 151 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 151 164 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 175 187 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin signature 251 267 IPR002963 GO:0009664
Gso2g2049 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 176 IPR007112 -
Gso2g2049 270 PANTHER EXPANSIN-A15 24 269 IPR002963 GO:0009664
Gso2g2049 270 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Gso2g2049 270 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Gso2g2049 270 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Gso2g2049 270 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Gso2g2049 270 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Gso2g2049 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Gso2g2049 270 SUPERFAMILY Barwin-like endoglucanases 40 194 IPR036908 -
Gso2g2049 270 Pfam Expansin C-terminal domain 177 254 IPR007117 -
Gso2g2049 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 265 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2049 Gso-Chr2 45099317 45101576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2049 44 270 Expansin Gene Family AT3G03220 85.463 1.69e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2049 - - gmx:100784516 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1777 14 50062289 50064628 Gso2g2049 2 45099317 45101576 GST
Gso18g0391 18 3881773 3884638 Gso2g2049 2 45099317 45101576 PCT
Gso2g2049 2 45099317 45101576 Gso18g0391 18 3881773 3884638 PCT