Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2038 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGCTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACCAACAGAGAAGTTGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTGCAGCCGCTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCGTTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGCGCTGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGAGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAACGACTAGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTCATGCCATCCTCAGTTCTATCTAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAACCCAAGGGCTAGTCCATCTGAATTTGTCATACCGCTTTCAAAATATATCAAAGCTGTGTACCATACGCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGACGAATCAACCGCTGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACGTTTCCAATGTATCCATCTCTATTTCCCCTCAGATTGAAACGACCCTGGCATCCGGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTTATGTGGCTGAGGGGTGGACCTGGAGACCAAGCTCTCAATTCCCTGAATTTTCAAGGTTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTACTTGCAAATGATCATAATCAGCACTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATTTAATGAGACAACAAATAATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTTTGCAGCTTCAGCAACCGCAAGCAATTCAGCAATCCGTATCTTCTAATAATATTCTACAGCCACAAGCCCAAGTAATGGCAGAGAACCTGTCTCAGCACCTCCTTCAGAAATCACACAACAATCGAGAAGACCAAACACAGCAGCAGCAGCAGCAGCGGCACACTTATCAAGATACAGTTTTACTTCAAAGTGATCAGCTCCATCAGAGGCAACACTCTGGTCTACCTTCACCGTCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTTCAGTTTCACCAGGACAAAACATTCTTGGTTCACTTTGTCCTGAAGGGAGTGGTAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCTCAACAATCATGGGCCCCAAAATTCACACCGTTGCAGGTTAATGCTTTTGGCAACTCAATGCAACATGTGCAGTATTCTGGAAAAGATACCGCAATGGTGCCACCACATTGTAACTCGGACACCCAAAATCCTATTCTATTTGGGGTCAACATCGATTCATCTGGTCTTCTGCTCCCTACGACTGTCCCGCGTTATACTACTGCATCAGCGGATAGTGATGCATCAGCAATGCCATTAGGAGAGTCTGGATTCCAGTCTCCTTTATATCCTTGTGGTCAAGATTCATCAGAGTTGGTGCAAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTCGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGCGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTATGGTATATCAAAATACTTTCACCTGAAGATATCCATAAAATGGGAGAACAAGCCCTGGAATCCCTTGGTCCAAGTCCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCTCATGAAATTGTTTCAGGACTACCATCAATTGGCTCCCTTGAATACTGA 2544 0.4568 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVAYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQALNSLNFQGSGLLPWMQQRMDPTLLANDHNQHYQAMFASGLQNLGSGDLMRQQIMNFQQPFNYLQQSGNPNPPLQLQQPQAIQQSVSSNNILQPQAQVMAENLSQHLLQKSHNNREDQTQQQQQQRHTYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPASVSPGQNILGSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNAFGNSMQHVQYSGKDTAMVPPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADSDASAMPLGESGFQSPLYPCGQDSSELVQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIHKMGEQALESLGPSPGQRLNSTGADSHEIVSGLPSIGSLEY* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2038 847 Gene3D - 717 810 - -
Gso2g2038 847 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso2g2038 847 MobiDBLite consensus disorder prediction 468 488 - -
Gso2g2038 847 MobiDBLite consensus disorder prediction 546 565 - -
Gso2g2038 847 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Gso2g2038 847 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Gso2g2038 847 SMART B3_2 128 230 IPR003340 GO:0003677
Gso2g2038 847 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Gso2g2038 847 MobiDBLite consensus disorder prediction 814 835 - -
Gso2g2038 847 MobiDBLite consensus disorder prediction 546 563 - -
Gso2g2038 847 CDD B3_DNA 127 228 IPR003340 GO:0003677
Gso2g2038 847 Pfam AUX/IAA family 717 805 IPR033389 -
Gso2g2038 847 Gene3D - 292 364 - -
Gso2g2038 847 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Gso2g2038 847 MobiDBLite consensus disorder prediction 819 834 - -
Gso2g2038 847 PANTHER AUXIN RESPONSE FACTOR 1 829 - -
Gso2g2038 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 829 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso2g2038 847 SUPERFAMILY CAD & PB1 domains 719 795 - -
Gso2g2038 847 Gene3D - 126 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2038 Gso-Chr2 44988234 44999250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2038 98 821 B3 DNA Binding Superfamily AT5G37020 68.126 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso2g2038 AUX_IAA 7.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2038 - - gmx:100780393 1674.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1763 14 49909512 49917803 Gso2g2038 2 44988234 44999250 GST
Gso18g0417 18 4154198 4161702 Gso2g2038 2 44988234 44999250 PCT
Gso2g2038 2 44988234 44999250 Gso18g0417 18 4154198 4161702 PCT