Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2019 ATGGCAAAGGGTTGCTCCAACAACACTTATGAAGAGGCTAGAAAACAAAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTGGGAATTTCGAGGATTTCAAAAAACTTGACTGAAATCGCAAGTTCTGCAAAGAAGAAGCTGCGTCATGTTCCTAAACAGAAAACAAAGAAGACAAATGTTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGAAACCCAGTTCGTTCATACCGTGAAGATGTGAACATAGACCTTCCACCCTTGCGGAAGAGGTCAAGGTCAAGTTCTTCATCATGGGGAAGTTACATTGCGAGGCCTCTAGATGAAATCAAAGAAGCAACAAAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAGGCAATCCAAATCAATTTGAACTCATCAAATCCATCATTTATCAAGTCAATGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTGCCAAAAACTTTACATGACATGGTTTTAGAAGATGAAAATGGCTCAGAATATGAGGCTGTTTACATTGGCAACAGAGCTGGGCTTAGTGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTCGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAGCTTCAAGATTTAAGATTTATATTGTAAGAGCATTTCCAGATTCAGTTGAAGAAAAGGGAAATAATATTTTAGAGGAAGAAGGAAATGTGCGTGCAACCAAAGCACCAAAAGCTGCCTGTAATCTTGAATCGGAATGTAAGACAAAAAAGCCAAAACAGGCTGCAGTTTATGAAACTAAGGAATCAGAGAGTTCTCAGGAATATCTTCTAGATAGCAGCATTGACAACGAAGTGAAACCACAGGGAGTAAATCCAACTAATAAGGAAACTAAATTTTCTCAGAAAAATACGCCAAAGAAATCTAAATATCCTGCTACTGCTGATTCAAAAGGGAAAGTGCAAATTAAAACTGAGAAACCAAAGGCATCTATAAAGCTGTCAAACAATACAAGGAAGTCGAAAGAAGGTATAAATGAAATTGGTGGTTCAGCCAAGTTAGAAAAGAATGAGTTTGTTCAGGATGCTGATAGCAAGTTAGAGAAAGTTGAACTAGTTGAAGAAGCAAGAAAATGTGTCACAAAAAAGCTAGAAAAAACCAGCTCCAAATTTTTCAGAAAGAAAGCATAA 1191 0.3812 MAKGCSNNTYEEARKQRLEENKKRFEDLGISRISKNLTEIASSAKKKLRHVPKQKTKKTNVEVEPRRSSRVRNPVRSYREDVNIDLPPLRKRSRSSSSSWGSYIARPLDEIKEATKEERLCALEAAEAIQINLNSSNPSFIKSMGLPSKFCEEHLPKTLHDMVLEDENGSEYEAVYIGNRAGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPDSVEEKGNNILEEEGNVRATKAPKAACNLESECKTKKPKQAAVYETKESESSQEYLLDSSIDNEVKPQGVNPTNKETKFSQKNTPKKSKYPATADSKGKVQIKTEKPKASIKLSNNTRKSKEGINEIGGSAKLEKNEFVQDADSKLEKVELVEEARKCVTKKLEKTSSKFFRKKA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2019 396 Pfam B3 DNA binding domain 142 217 IPR003340 GO:0003677
Gso2g2019 396 MobiDBLite consensus disorder prediction 55 73 - -
Gso2g2019 396 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 4 233 - -
Gso2g2019 396 Coils Coil 8 28 - -
Gso2g2019 396 MobiDBLite consensus disorder prediction 42 73 - -
Gso2g2019 396 CDD B3_DNA 133 218 IPR003340 GO:0003677
Gso2g2019 396 ProSiteProfiles B3 DNA-binding domain profile. 129 220 IPR003340 GO:0003677
Gso2g2019 396 MobiDBLite consensus disorder prediction 274 329 - -
Gso2g2019 396 SUPERFAMILY DNA-binding pseudobarrel domain 134 218 IPR015300 -
Gso2g2019 396 MobiDBLite consensus disorder prediction 274 311 - -
Gso2g2019 396 Gene3D - 114 220 IPR015300 -
Gso2g2019 396 SMART B3_2 129 220 IPR003340 GO:0003677
Gso2g2019 396 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 233 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2019 Gso-Chr2 44746101 44754929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2019 10 219 B3 DNA Binding Superfamily AT5G58280 47.177 5.17e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso2g2019 B3 3.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2019 - - gmx:100786265 727.628