Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2014 ATGTCCGTACACTCAAAACTGAAGCACCACCCCATGAACCTTGCAACCCCAAGTTCCCATTTTGACAACGACCCACCATGCAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAGTCACCGACCATGACGCCACCGATTCAGACTCCGACGAAGAAGAAGAAGAACAACAACAAACAACAAGAGTGAAGAGAGAAATCACCCAAATCAACATGCAACTTCCTCTCTCATACAATAGTTCCTTTCCCTCTTCATCTTCTTATTACTCTTCGGCTTCAGCTTGCACTTCATCGGAACAAAACCTAAAGTGTAAGAGACCAAACAAAAAGCCGCCACCGTTCTCCGCCGTGGTCCGCCGCCGCAACAACAAGTTTCGCGGCGTCCGGCAGCGGCCTTGGGGGCGGTGGGCAGCCGAGATCCGCGACCCCACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCTACGGAGTACGACAGAGCCGCCGTGAAACTCAAGGGCCCGAACGCCGTCACCAACTTTCCTCTCACGCCGGAGGCCGCGGCGGAGGCTCCGGTGGTCTCCGTCGACAACCTCAGCTCTGACGGCGGCGCGTCGTACTCCGACTTAGTGGCCTCTCCCACGTCCGTTTTAGCCTACGAGTGCGACTCGACGCCGTTCGACGGTTTCCGTTACCTCGACGTGGAGGCGTTCGAGTTCCACATCGATGCGCCGTTAAGTTTGCCGGACGTTAACGTTGCGCTGACGTGTCATCACGGGAAGAAGGAGGAGGAGGTGGCGTTCGATGAATTCGATATCGACGAATTCATGACTTGGCCTTACTAG 849 0.5607 MSVHSKLKHHPMNLATPSSHFDNDPPCKTKTKTQRRLLRIIVTDHDATDSDSDEEEEEQQQTTRVKREITQINMQLPLSYNSSFPSSSSYYSSASACTSSEQNLKCKRPNKKPPPFSAVVRRRNNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFPLTPEAAAEAPVVSVDNLSSDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDVEAFEFHIDAPLSLPDVNVALTCHHGKKEEEVAFDEFDIDEFMTWPY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2014 282 MobiDBLite consensus disorder prediction 44 65 - -
Gso2g2014 282 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Gso2g2014 282 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Gso2g2014 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 29 226 - -
Gso2g2014 282 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Gso2g2014 282 MobiDBLite consensus disorder prediction 101 123 - -
Gso2g2014 282 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Gso2g2014 282 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Gso2g2014 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 226 - -
Gso2g2014 282 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Gso2g2014 282 Gene3D AP2/ERF domain 125 192 IPR036955 GO:0003700|GO:0006355
Gso2g2014 282 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Gso2g2014 282 MobiDBLite consensus disorder prediction 1 32 - -
Gso2g2014 282 PIRSF PTI6 8 282 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2014 Gso-Chr2 44643117 44645078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2014 28 223 AP2-EREBP Transcription Factor Family AT4G27950 44.500 1.17e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g2014 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2014 K13434 - gmx:100817278 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1735 14 49586738 49588711 Gso2g2014 2 44643117 44645078 GST
Gso18g0457 18 4502259 4503791 Gso2g2014 2 44643117 44645078 PCT
Gso2g2014 2 44643117 44645078 Gso18g0457 18 4502259 4503791 PCT