Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2009 ATGGAGGTTGAGGTTTGCATGAACGTTTCGTGCAAGAATGGCTATGCTAGAGAATGGAAGAAGGGGTGGCCTTTGCGATCGGGTGGATTCGCTAGACTCTGCCACAAGTGCGGATCTGCCTATGAAAATTTAATTTTCTGTCAGAAATTTCACCTACATCAAACGGGGTGGAGAGAGTGTTCCTTTTGCAACAAGACTTTACACTGCGGATGTATTGCATCGAGCTCTATGTTTGAGTACCTTGATTATGGAGGCATAGGTTGTGTTACCTGTGTAAAGACTTCGCAACTTAATTTGATACGGGATACTGAAAACACTATCGGGTCTGTTAGATCAATAAAAAACAATGCAAGTGATCGTCATACTGAACATATGGATTCTAGATTATTGGTGGATGGTGCTGGCAAAGGAAACCTTATGCAGTTGCGTAGGCATGTTGAAGCTAGTGAATCCAGCCGTTGGCAACGAGCTGAGAGAGATGGCATAGATTCATGTATTGGTCCAAACAGGCAAGATGATAGAAGATTTTCAAATGTGATGAAACTGTCTGGTCACTCATTAACATTTACAACATTAGATAATAACAGACCAACATGGGAGACACAAACTATGCACAAATCAAGTTCACAGAATATGTCTCTGGGAACCTCATCAGGAAATTCTGTCCTGCCTTCTGCTTTAGACATTGCAGAAAGGAGACTTGAGGGTAAAACATCGTTTTGTCCCTTTCATCAAGGGCAAAGACTTTTCTCCATATCTAAACCATTGATGGATGGGATAGCCATTAATCTGGAAGCTAGTAAAGGTGTGATTTCTCAGGAACGCGTTGCCCGGCCACCTGCTAATGGGAAAACCAAGAATCTGTTACTTTCTCGATACTGGCCTAGGATTACTGATCAAGAGCTGGAGAAATTGTCCGGAGATTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAGGCTTACTTTCCTCCTATTTCACAGTCAGAAGGTCTTCCTTTGCAGTTCAAAGATGTGAAGGGAAATGACTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGAATGTATGTATTGGAGGGAGTAACCCCTTGCATGCAGGCCATGCAATTAAATGCTGGTGATACTGTAATGTTTAGTCGGATAGATCCCGGAGGCAAATTTGTTATGGGTTCCAGAAGGGCATCAGATTCTATAGATACACAGGAGGCCTCTACTTTTTCTCACTCCAATGATTTTGCAACAAAGGAAGCAACCTTTTCTGGTGCAACTGCAAATCTGCACTCAGGAAACAGTTATCCTGATCTTCTCCGCACAACGAAAGGGAATGGCGAACCTTACTTAAACAGATATTCAGAACATTTGCGTTTCAGTACCGAAACTGCTAATTGTCTACAAACTGAAAATGATATGGAGTTGAGAGTTACGTGGGAAGAAGCACAAGACTTGCTTCATCCACCACCTTGTGTCAAGCCAAGTGTTGAAACAATTGAGGACAAAGAATTTGAGGAATTTGAGGAACCCCCGGTTTTTGGAAAGGGAACTACAATCAATGACCACCCATCTGGGTCTTTGAGCTCTGCATCAGAGGAAATGAGTTCGAGGGAGTTGGAAAATATTCTTGTAACCAGCAAAGATACTAAAAAGCGAAGAATTATGGAAAAACCTGAGTCAATCCAAGAACACGAGTCTGTTGGCTTAGATGATCATATTGACCCTACTGATTCATCAGCTGGTGCCACAACCAAGCATCCAAGGCACCGTTCTGGATGCACTTGTATTGTGTGCATTCAGCCCCCAAGTGGAAAAGGGAGGCATAGGCCAACATGCACTTGCCTTGCCTGCATGACCGTGAGGCGCCGGTTCAAGACCCTTATGATGCGTAAGAAGCAACGCGAATCAGATGCTACCCAAAAGGATCAGATTCATCACAGTGATGAGGGAGACACCAATGGTGGTGCATCAAGAGATGGTGCAATTGCAAGTAACTTGGAGAATGAGGGAAGCCTCAACAGAATGGATGAACTTGGTGCAGGACAAATAGACCTGAATAGTCATCCCGATCATGAAGACATGCAAGTGGCTATGTGA 2157 0.4349 MEVEVCMNVSCKNGYAREWKKGWPLRSGGFARLCHKCGSAYENLIFCQKFHLHQTGWRECSFCNKTLHCGCIASSSMFEYLDYGGIGCVTCVKTSQLNLIRDTENTIGSVRSIKNNASDRHTEHMDSRLLVDGAGKGNLMQLRRHVEASESSRWQRAERDGIDSCIGPNRQDDRRFSNVMKLSGHSLTFTTLDNNRPTWETQTMHKSSSQNMSLGTSSGNSVLPSALDIAERRLEGKTSFCPFHQGQRLFSISKPLMDGIAINLEASKGVISQERVARPPANGKTKNLLLSRYWPRITDQELEKLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLQFKDVKGNDWTFQFRFWPNNNSRMYVLEGVTPCMQAMQLNAGDTVMFSRIDPGGKFVMGSRRASDSIDTQEASTFSHSNDFATKEATFSGATANLHSGNSYPDLLRTTKGNGEPYLNRYSEHLRFSTETANCLQTENDMELRVTWEEAQDLLHPPPCVKPSVETIEDKEFEEFEEPPVFGKGTTINDHPSGSLSSASEEMSSRELENILVTSKDTKKRRIMEKPESIQEHESVGLDDHIDPTDSSAGATTKHPRHRSGCTCIVCIQPPSGKGRHRPTCTCLACMTVRRRFKTLMMRKKQRESDATQKDQIHHSDEGDTNGGASRDGAIASNLENEGSLNRMDELGAGQIDLNSHPDHEDMQVAM* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2009 718 MobiDBLite consensus disorder prediction 650 673 - -
Gso2g2009 718 SUPERFAMILY DNA-binding pseudobarrel domain 314 412 IPR015300 -
Gso2g2009 718 MobiDBLite consensus disorder prediction 539 556 - -
Gso2g2009 718 CDD B3_DNA 315 416 IPR003340 GO:0003677
Gso2g2009 718 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 546 - -
Gso2g2009 718 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 548 717 - -
Gso2g2009 718 MobiDBLite consensus disorder prediction 531 556 - -
Gso2g2009 718 MobiDBLite consensus disorder prediction 649 682 - -
Gso2g2009 718 Gene3D - 295 422 IPR015300 -
Gso2g2009 718 MobiDBLite consensus disorder prediction 569 592 - -
Gso2g2009 718 Pfam B3 DNA binding domain 317 416 IPR003340 GO:0003677
Gso2g2009 718 MobiDBLite consensus disorder prediction 569 609 - -
Gso2g2009 718 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677
Gso2g2009 718 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 546 - -
Gso2g2009 718 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 548 717 - -
Gso2g2009 718 SMART B3_2 317 417 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2009 Gso-Chr2 44553219 44561293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2009 1 717 B3 DNA Binding Superfamily AT2G30470 41.804 5.77e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso2g2009 B3 7.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2009 - - gmx:100782543 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1724 14 49426646 49434468 Gso2g2009 2 44553219 44561293 GST
Gso18g0462 18 4566897 4576245 Gso2g2009 2 44553219 44561293 PCT
Gso2g2009 2 44553219 44561293 Gso18g0462 18 4566897 4576245 PCT