Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2004 ATGGGAGAAAATTGTTATGTGGAAACCGACCCAACTGGTCGGTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATCGATGAGGTGCTTGGAATTGAGGTAGCATGGAACCAGGTCAGACTCAACGAGGCGCTTCGCACGCCGGACGATTTGCAGCGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATATTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCTGGGTCACTGAGAGAATACAGGAAGAATTATAAACGTGTCAACATACAAGCTATAAAGAATTGGGCTTGCCAAATCTTGCAAGGTCTTGTTTATCTACATTGCCATGATCCACCAGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGTCATCTTGGACAAGTAAAAATTGGTGATCTGGGACTGGCTGCAATTCTTCGCGGTTCCCAATTAGCACATAGTGTTATAGGCACTCCTGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGCTGATGTATATTCATTTGGCATGTGTGTTCTGGAAATGCTCACATCTGAATATCCATATAGTGAATGTTCTAATCCAGCACAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCTTTTTTCCGGATTGAAGACATGGAAGCACAAAGATTTATTGGAAGATGCTTGGTACCTGCAGAAAAGAGACCATCAGCAAAAGAATTGTTGCTTGACCCTTTTCTTGTGTCTGATGATCCATCATCAACAAAGAAATTTGCAATTCAGAAACCATTTTTGAATGTCAATGAGATGGAGAAACTGCAATTAAGTGATGATCTTCCTAGGACTGGAATGAAAGTGATAGGGAAGCTGAACCCAGAAGATGACACTATCTTTCTCAAAGTGCAAATTTCTGATAAGGATGGTTCTGCTAGAAATGTATTTTTTCCCTTTGACATATTATCTGACACACCTATTGATGTTGCAACCGAGATGGTGAAAGAGTTGGAGATTGCAGATTGGGAGCCTTTTGAGATTGCAAATATGATTGACAGAGAGATATCTGCTCTGCTACCTCACAGAAGGCAAAGTAGTTGTTCAGATGCCTTCCACACATTCAATTATCTGGATGATGATTGTGATGATGATGAACCTCATCATCATTTCCGCTCGTTCTCTTCTAGTTCATCGTTCCAAGAATCAATGTCAGATTTAGTCAGCAAAGCTGAGGAAATATCAAGTGGATATTATTGGCTCCATGATGATTTGCATGATGATACCAGTTCACGATGCTCTTCACAAGGGACATATTCCAACTTGAATTACTATTCTCTGGATGATCATCATCAAGAGTACAACGTGCCATCTTTGAGAAAAGATAAACTTCCCATCACAAAGAGTCACAACAAGGGCAAAAAGGTTTCCTCAGGCGAAGACTTGAGCAATTTCAACCAATATAAACTCATGGTAGGATCACAGGTTCCTCTCACTAGTAAAAGCAAGATGATGATGAACAATCATCATAGATTAACAAGGAACAGGTCATTGATTGATATAAGGAGCCAACTATTGCACCGTTCACTGGTTGAAGAGGTGAACAAAAGAAGGTTATTCAAGACAGTTGGTGCTGTGGAGAATATTGGATTTCAGGCACCTTGTGATGTTTCCACAAAAAGGTCACAGCATGTATGTGTTGCTCCAAATGAGAACTCTCCAAGGAGTGGCAAGGGAGGAAAAATTAAGAGATGA 1827 0.4056 MGENCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPDDLQRLYSEVHLLSTLKHQSIIRFYTSWIDIDNRAFNFITELFTSGSLREYRKNYKRVNIQAIKNWACQILQGLVYLHCHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQLAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQRFIGRCLVPAEKRPSAKELLLDPFLVSDDPSSTKKFAIQKPFLNVNEMEKLQLSDDLPRTGMKVIGKLNPEDDTIFLKVQISDKDGSARNVFFPFDILSDTPIDVATEMVKELEIADWEPFEIANMIDREISALLPHRRQSSCSDAFHTFNYLDDDCDDDEPHHHFRSFSSSSSFQESMSDLVSKAEEISSGYYWLHDDLHDDTSSRCSSQGTYSNLNYYSLDDHHQEYNVPSLRKDKLPITKSHNKGKKVSSGEDLSNFNQYKLMVGSQVPLTSKSKMMMNNHHRLTRNRSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQAPCDVSTKRSQHVCVAPNENSPRSGKGGKIKR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2004 608 CDD STKc_WNK 14 274 - -
Gso2g2004 608 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2004 608 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 3 594 - -
Gso2g2004 608 ProSiteProfiles Protein kinase domain profile. 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2004 608 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Gso2g2004 608 SMART serkin_6 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2004 608 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 594 - -
Gso2g2004 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gso2g2004 608 SUPERFAMILY Protein kinase-like (PK-like) 17 302 IPR011009 -
Gso2g2004 608 Gene3D Transferase(Phosphotransferase) domain 1 99 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2004 Gso-Chr2 44465625 44471130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2004 6 584 MAP Kinase Kinase Kinase AT5G58350 59.520 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gso2g2004 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2004 K08867 - gmx:100272203 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0476 18 4775052 4780587 Gso2g2004 2 44465625 44471130 PCT
Gso2g2004 2 44465625 44471130 Gso18g0476 18 4775052 4780587 PCT