Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1995 ATGTTTCCTATGGAGAACACATCAAACATCTTGATGCAAAAATATGAGTTGGGAAGGTTACTAGGCCAAGGCACATTTGCAAAGGTTTACTATGCACGTAGCACAATCACTAACCAAAGTGTGGCTGTTAAAGTGATTGACAAGGATAAGGTTATAAAAAATGGGCAAGCTGATCACATTAAACGGGAAATATCGGTTATGAGACTGGTTAAGCATCCAAATGTTATTGAGCTTTTTGAGGTTATGGCCACCAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGAGAGTTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGAAGTTGCACACAAGTATTTTAGGCAGCTAGTGAGTGCAGTGGATTTTTGTCACAGTCGAGGTGTATACCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGAGAATTTGAAGGTCTCGGATTTCGGGTTAAGTGCGTTGGCCGAGTCCAAACGGCAAGATGGCTTGTTGCACACAACTTGTGGAACACCAGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCCAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTGGCTGGTTACTTTCCTTTTCATGACCCTAATATGATGGAGATGTATAGGAAGATAAGCAAGGCAGAGTTTAAATTTCCTAGTTGGTTCCCGCAAGGTGTTCAGCGGCTATTGCGCAAGATGTTGGATCCGAATCCGGAAACTAGGATTTCCATAGATAAGGTTAAGCAATGTTCTTGGTTTAGGAAGGGGCCAAATGGTAGACAGAAAACACAAGAAGGGGAAAACCTGTGTGTCTCTCCTTCAGTTACAAATCATTCTGAACAATGTGGTGATGAAAGTGATGATTTAGCAGCAGAAGCAAGGGAAGAGCAAGTTGTGCCAGTAAGTATAAATGCCTTTGATATAATCTCCCTTTCACCAGGTTTTAATCTTTGTGGATTCTTTGAAGACAGTATTCAGAAAAGGGAAGCAAGGTTTACTTCAAGACAACCGGCATCAGTCATCATCTCCAGGCTGGAAGAAATCGCGAAGCAGATGAGGATGAAAATAAAGAAAAGGGCTGCAGGTTTGTTGAAATTGGAGGGCCTTCATGAAGGTAGGAAGGGGATTTTATCCATTGATACAGAGATCTTTGAGGTTACTCCACTTTTGCATTTGGTGGAGGTGAAGAAATCAAATGGAGATACATTGGAATATGAGAAAATACTGAAGGAGGACATTAGGCCTGCTCTTAAAGACGTTGTTTGGGTTTGGCAAGGTGACCAACAAGAGCAATCACAACAGTTGGAGCAACAGAAGCAGCAACAACAATTACCACAGTCATAA 1392 0.4124 MFPMENTSNILMQKYELGRLLGQGTFAKVYYARSTITNQSVAVKVIDKDKVIKNGQADHIKREISVMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEEVAHKYFRQLVSAVDFCHSRGVYHRDIKPENILLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYFPFHDPNMMEMYRKISKAEFKFPSWFPQGVQRLLRKMLDPNPETRISIDKVKQCSWFRKGPNGRQKTQEGENLCVSPSVTNHSEQCGDESDDLAAEAREEQVVPVSINAFDIISLSPGFNLCGFFEDSIQKREARFTSRQPASVIISRLEEIAKQMRMKIKKRAAGLLKLEGLHEGRKGILSIDTEIFEVTPLLHLVEVKKSNGDTLEYEKILKEDIRPALKDVVWVWQGDQQEQSQQLEQQKQQQQLPQS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1995 463 MobiDBLite consensus disorder prediction 272 296 - -
Gso2g1995 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Gso2g1995 463 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Gso2g1995 463 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gso2g1995 463 CDD CIPK_C 320 434 - -
Gso2g1995 463 MobiDBLite consensus disorder prediction 271 299 - -
Gso2g1995 463 Pfam NAF domain 316 374 IPR004041 GO:0007165
Gso2g1995 463 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1995 463 Gene3D Transferase(Phosphotransferase) domain 1 5 318 - -
Gso2g1995 463 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1995 463 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 455 - -
Gso2g1995 463 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1995 463 Gene3D Kinase associated domain 1, KA1 319 439 - -
Gso2g1995 463 SUPERFAMILY Protein kinase-like (PK-like) 11 289 IPR011009 -
Gso2g1995 463 CDD STKc_SnRK3 14 268 - -
Gso2g1995 463 PANTHER - 5 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1995 Gso-Chr2 44374816 44377518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1995 4 446 CBL-interacting serine-threonine protein kinases AT5G58380 66.960 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso2g1995 Pkinase 3.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1995 - K07198 gmx:100779316 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0484 18 4859471 4862829 Gso2g1995 2 44374816 44377518 PCT
Gso2g1995 2 44374816 44377518 Gso18g0484 18 4859471 4862829 PCT