Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1991 ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCGATATCCTCATTTTCGCATTTATCATTTTCTGAAAGAATGAAGTCAGAACCTGTATCAAAGTATTACCAAAAGGCAGAGAAGATGCTTAAGTTGTTGAAGCCGATTATTGATACTACTGTTTTTTCTGATTTAGCTTCTAACAAATTGCTTAGTAAGCTATTTGAGGAACTTAGTCTAGCTGTTGATGAGTTGAGGGAGCTTATTCTGAACTGGCATCCATTATCTAGTAATTTTTACTTTGTTATTCAAGTTGATCCCTTAATATCAACAATTCAGGATTTGGGACTCAGCATTTTACAACAGCTGAAGGCTTCACCTCAAAGTCTCCTTGATAATTTACGAGATGAAACATCATCAACCATTAAAAAAGCTATTATGGAACAACTGGAAGGTGTAGGGCCAAGTACAGAGGTCCTGGAAAACATCGCCGAGAATCTGGGTCTAAGGTCTAATCAAGAGGCCCTGATAGAGGCTGTAGCCCTTGATAAGTTGAAGGAGAATGCTGAACAACTTGAAAATGCTGTAGAAGTTGAATTTATTGATCAAATGATCTCAGTTGTAAATCGTATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATCCCGGTGTTAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTAGAATTGATGATGGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGATCTTGGACTTACTGTTTGTCCCAAGACACGTCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTCAAGGCACTAATTGCTAACTGGTGTGAATCAAATGATGTGAAGCTCGTTGATCCCATGAAGTCCAAAAGCTTAAATCAGTCATCTCCTTTTCATGGGTCTATGGAGTCTGGTTTGATCAAGGATTTGCCTGAAATCCACCAAGAACGAACATCAACATTGCATTCCTCTTCAACTCCAAGTGGTTCCTTAAATGGTATGGTTAATGAGCAGCATGTGAATCTTGAAAGAATATCATCCACAGGTTCGGATGACGAGTCTGCCAGCTCAGATGAAGGGAGTGTGGATTCAGTTGACCAATCATTAATGTCACCATCTACAAGGGAATCCTCCAATGCCTTAAGCTCAGAACAATCTCAAACTGATGTTAGAACTACTTCTCATAACAATACTCCTCTGCTGTCAACCAGTTCAGTCCACAGTCAAGATGCTTCTGGAGAATTGAATTCAGGGCCAGATGCTGTTGCCATGCCAACTCGTCGTAGAGAACCTGAGTTTTCACCCCAATTGGCGGTGCCAAGGTCTCGAAGCCAAACTTTATGGCAAAGGTCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTAATCCTATCGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCGGAAATTATTGGAGCAGTTAAAGAGCGATTCTGTTGATTCTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGGAAAATATGGATAACCGAATTGTGATCTCAAATTGTGGAGCCATTAGCTTAATAGTTGATTTACTGCAATCAACCGATACTAGGATCCAGGAAAATTCTGTTACAACACTCCTTAACTTATCAATCAATGATAACAACAAAGCTGCTATTGCAAATTCTGGTGCAATTGAACCTTTGATTCATGTCCTTCAGACAGGGAGTCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGCAGGTCTGGGGCAATTCGACCACTGGTCGATTTATTAGGGAACGGAACGCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAACTTGTCATTATTTCATGAAAACAAGGATCGAATTGTGCAAGCCGGTGCTGTGAAAAACCTTGTAGAGTTAATGGACCCGGCAGCCGGAATGGTTGATAAGGCAGTGGCTGTTCTAGCAAATCTTGCTACGATACCAGAAGGGAAAACAGCAATTGGTCAGCAAGGTGGCATTCCTGTTTTGGTTGAAGTTATCGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATACTTAAACATGGTGCTCCAAGAAGGAGCTGTACCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCTTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGGAGCGCTGGGAGAGCTTGA 2316 0.4231 MEISLLKVLSDAISSFSHLSFSERMKSEPVSKYYQKAEKMLKLLKPIIDTTVFSDLASNKLLSKLFEELSLAVDELRELILNWHPLSSNFYFVIQVDPLISTIQDLGLSILQQLKASPQSLLDNLRDETSSTIKKAIMEQLEGVGPSTEVLENIAENLGLRSNQEALIEAVALDKLKENAEQLENAVEVEFIDQMISVVNRMHEHLVMLKQAQSSIPVLVPADFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCESNDVKLVDPMKSKSLNQSSPFHGSMESGLIKDLPEIHQERTSTLHSSSTPSGSLNGMVNEQHVNLERISSTGSDDESASSDEGSVDSVDQSLMSPSTRESSNALSSEQSQTDVRTTSHNNTPLLSTSSVHSQDASGELNSGPDAVAMPTRRREPEFSPQLAVPRSRSQTLWQRSSEWLVPRVVSNPIETRADLSAAETQVRKLLEQLKSDSVDSKREATAELRLLAKENMDNRIVISNCGAISLIVDLLQSTDTRIQENSVTTLLNLSINDNNKAAIANSGAIEPLIHVLQTGSPEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSLFHENKDRIVQAGAVKNLVELMDPAAGMVDKAVAVLANLATIPEGKTAIGQQGGIPVLVEVIELGSARGKENAAAALLHLCSDNHRYLNMVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGSAGRA* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1991 771 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Gso2g1991 771 Pfam Armadillo/beta-catenin-like repeat 600 638 IPR000225 GO:0005515
Gso2g1991 771 Pfam Armadillo/beta-catenin-like repeat 519 556 IPR000225 GO:0005515
Gso2g1991 771 Pfam Armadillo/beta-catenin-like repeat 558 597 IPR000225 GO:0005515
Gso2g1991 771 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Gso2g1991 771 PANTHER U BOX DOMAIN-CONTAINING 11 767 - -
Gso2g1991 771 Gene3D - 468 768 IPR011989 -
Gso2g1991 771 SUPERFAMILY RING/U-box 211 297 - -
Gso2g1991 771 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Gso2g1991 771 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 767 - -
Gso2g1991 771 Coils Coil 163 193 - -
Gso2g1991 771 SMART arm_5 599 639 IPR000225 GO:0005515
Gso2g1991 771 SMART arm_5 640 679 IPR000225 GO:0005515
Gso2g1991 771 SMART arm_5 517 557 IPR000225 GO:0005515
Gso2g1991 771 SMART arm_5 680 720 IPR000225 GO:0005515
Gso2g1991 771 SMART arm_5 558 598 IPR000225 GO:0005515
Gso2g1991 771 SMART arm_5 721 762 IPR000225 GO:0005515
Gso2g1991 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Gso2g1991 771 MobiDBLite consensus disorder prediction 357 426 - -
Gso2g1991 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Gso2g1991 771 CDD RING-Ubox_PUB 224 266 IPR045210 -
Gso2g1991 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 651 692 IPR000225 GO:0005515
Gso2g1991 771 SUPERFAMILY ARM repeat 487 760 IPR016024 -
Gso2g1991 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 294 IPR013083 -
Gso2g1991 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 610 652 IPR000225 GO:0005515
Gso2g1991 771 MobiDBLite consensus disorder prediction 357 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1991 Gso-Chr2 44318952 44325630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1991 180 771 U-box Gene Family AT2G23140 59.502 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1991 - - gmx:100777715 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1706 14 49203007 49205999 Gso2g1991 2 44318952 44325630 GST
Gso18g0486 18 4880620 4888510 Gso2g1991 2 44318952 44325630 PCT
Gso2g1991 2 44318952 44325630 Gso18g0486 18 4880620 4888510 PCT