Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1941 ATGGTTTCGTGGGTGAGAGGCAAGTGCGTCGGTAACGGCGCGTTTGGGGTTGTGAACGTGGCGATTTCGAAAAGAGATAATCGCGTTTTCGCGGTGAAGTCCGTGGATTGTGGAAGGGGGCTTTCTGGTCATCAGGTGGAGGCGTTGGAGAACGAGATTGGGATTCTGAAGCGGGTGGCTTCGCCGCACGTGGTGGCTTATCTCGGAGACGATGTCACGTGCGAAGGAACGGCGTCGTTCAGGAATCTTCATCTGGAGTACATGCCAGGTGGCACCGTCGCTGACTTGGACCGCGCTGACGTGGACGAGCGGTTAGTGAGGCGCTTCGCGTGGTGCCTCGTGTCCGCGCTGCGTGACGTTCACGCGCAAGGCTTCGTCCACTGCGACGTGAAAGGGAGGAACGTGCTTCTCTCCGGCGACGGCGAAATCGTGAAGCTCGCCGATTTTGGCACGGCGGTGGAAATTGAATCCTCGCCGGCGGAGATGTTATTGTTGTCGCGGGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTTCGCCGGCAGAGGCAGGGGCCGGAGTCCGACGTGTGGTCGCTCGGATGCACGGTGATCGAGATTGTCACCGGGAAACCGGCGTGGGAGGATCGCGGCGTCGACACGCTGAGTCGAATCGGTTACTCAGACGAGTTGCCGGAATTTCCAAACCAGTTGTCGGAGCTAGGGAAGGATTTTCTCGAGAAGTGTCTCAGAAGAGAACATAGTGAACGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACTACGCGGTTGCTGAATCGTCGCCTCGCTGCGTTCTCGACTGGGTTGACTCGGAGCTCAACTCCGAGTCAGATTGTAACGACCGTGATCATCAAGAAGACGTGTTTATAAAATTTACCAACAGCGAAGAAAAATCAGTTATTAAAAATAGAATTAGTAAATTTGCGACAGAGTCGAGGGTAAATTGGGAAACGCAGGGTTGGATAGTGGTGAGGGAAATTGAGTCCAACGGAAAACCAACGACAACGGGAACAGAAACAGAAATAGAGGAAGGAGCATGTACGTGTGAGTGTGATGGTGTTGGTTCGAGCAAAGAAGGGGTAAATTGGGAGTTTCACAATGTGGCGGGGACTGGTATGGAATATTCGGATTCTGTAGGGGTAAATCGGGGAATAGGAAAGTTGGGTGGGAGTAACACCGCTGGAGGGGGTGGTGGTTGGAGCTGTCGGTATGGGTGTGGGTGGGAAAAGTTGGGTAGGAATAGAGGAATATTCAGCATTTACAGCTTGTATTGTAAAAATTTCATGTTGTGTAATTTAATATTCTTAATGTATATCAATATATATTATGCTTTTGGATTATTGATGTTGTTTACCTTTTACTACACGTGA 1401 0.5182 MVSWVRGKCVGNGAFGVVNVAISKRDNRVFAVKSVDCGRGLSGHQVEALENEIGILKRVASPHVVAYLGDDVTCEGTASFRNLHLEYMPGGTVADLDRADVDERLVRRFAWCLVSALRDVHAQGFVHCDVKGRNVLLSGDGEIVKLADFGTAVEIESSPAEMLLLSRGSPMWMAPEVVRRQRQGPESDVWSLGCTVIEIVTGKPAWEDRGVDTLSRIGYSDELPEFPNQLSELGKDFLEKCLRREHSERWSCDQLLQHPFLLPYYAVAESSPRCVLDWVDSELNSESDCNDRDHQEDVFIKFTNSEEKSVIKNRISKFATESRVNWETQGWIVVREIESNGKPTTTGTETEIEEGACTCECDGVGSSKEGVNWEFHNVAGTGMEYSDSVGVNRGIGKLGGSNTAGGGGGWSCRYGCGWEKLGRNRGIFSIYSLYCKNFMLCNLIFLMYINIYYAFGLLMLFTFYYT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1941 466 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 363 - -
Gso2g1941 466 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1941 466 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso2g1941 466 CDD STKc_MAPKKK 3 261 - -
Gso2g1941 466 SMART serkin_6 4 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1941 466 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 363 - -
Gso2g1941 466 Gene3D Transferase(Phosphotransferase) domain 1 3 330 - -
Gso2g1941 466 ProSiteProfiles Protein kinase domain profile. 4 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g1941 466 SUPERFAMILY Protein kinase-like (PK-like) 4 317 IPR011009 -
Gso2g1941 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1941 Gso-Chr2 43723190 43724687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1941 4 336 MAP Kinase Kinase Kinase AT2G30040 57.567 9.09e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso2g1941 Pkinase 5.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1941 - - gmx:100807131 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1646 14 48544200 48545849 Gso2g1941 2 43723190 43724687 GST
Gso18g0539 18 5571429 5573086 Gso2g1941 2 43723190 43724687 PCT
Gso2g1941 2 43723190 43724687 Gso18g0539 18 5571429 5573086 PCT