Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g1940 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTGTTCTCTCCTTCTTCTTCCCTCTTCTGCTCGAAGCCCTCCATCATCTCTTCTTCGCCGGAATCCCTCTCGCTCTCTCTCTCGCATCTCAAACCTTCCAACTCTTCTACGACGTCGTCTTGTTCTTCACCCTCTGCTGCTGCTTCTTCATCTTCTTCTCCTTCTTCTCCGTTTCGGCTTCGCCTTCCCAAGCCTCCCACCGTGTTCTCTGCTTCTTCTTCTGCTTCGTCTACCTCTCCGAACGGCACCGTTTTGAAGAGGAAGCGACCCGCTAGGTTGGACATACCCGTTTCCTCTCTCACCTTTGCGGTTCCGCCCACGCCCTCCGCGGCGGCGCGTGACTTGGTCGAGGCTGAGGAAGATGGGTTTGGGGTGTACTGCAAGAGAGGCAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGAATAATCTTCGCGGAGAACACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGTGGTGCAAAAGCTGCTGAATTTGCTGCAAATAACTTGCAAAAGAATGTGTTAGATGAAGTTATTGTGAGAGATGAAGATGATGTTGAGGAGGCAGTGAAGCGTGGGTACCTGAACACCGATTCGGATTTCCTAAAGGAGGATCTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAATGGTAACCTCGTTGTGTCCAACGCGGGTGATTGCCGTGCTGTCATTAGCAGAGGGGGTGTTGCTGAGGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAGCCTGGGTGGCTATGTCGATTTATGCCGCGGTGTTTGGAGGATCCAGGGATCTCTGGCTGTGTCAAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCCGAATTGAACCTGAACATGACTTGTTAATTTTAGCTTCAGATGGATTATGGGATAAGGTTGGTAATCAGGAAGCAGTAGATATTGCTCGTTCTTTTCTCGTAGGCAACAACAAATCACAACCATTGCTGCAGGCTTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGCTCTTTGGATGATACAAGTGTCATGCTAATCAAATTGGAGCACTATATTTAA 1170 0.494 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPSNSSTTSSCSSPSAAASSSSSPSSPFRLRLPKPPTVFSASSSASSTSPNGTVLKRKRPARLDIPVSSLTFAVPPTPSAAARDLVEAEEDGFGVYCKRGRREYMEDRYTAGNNLRGEHKLAFFGIFDGHGGAKAAEFAANNLQKNVLDEVIVRDEDDVEEAVKRGYLNTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVGNQEAVDIARSFLVGNNKSQPLLQACKKLVDLSVSRGSLDDTSVMLIKLEHYI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g1940 389 SMART PP2C_4 123 383 IPR001932 -
Gso2g1940 389 MobiDBLite consensus disorder prediction 78 95 - -
Gso2g1940 389 CDD PP2Cc 133 385 IPR001932 -
Gso2g1940 389 Pfam Protein phosphatase 2C 134 377 IPR001932 -
Gso2g1940 389 MobiDBLite consensus disorder prediction 37 69 - -
Gso2g1940 389 MobiDBLite consensus disorder prediction 37 101 - -
Gso2g1940 389 ProSiteProfiles PPM-type phosphatase domain profile. 133 385 IPR001932 -
Gso2g1940 389 ProSitePatterns PPM-type phosphatase domain signature. 164 172 IPR000222 GO:0043169
Gso2g1940 389 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 388 - -
Gso2g1940 389 Gene3D - 124 388 IPR036457 -
Gso2g1940 389 SMART PP2C_SIG_2 131 385 IPR001932 -
Gso2g1940 389 PANTHER PROTEIN PHOSPHATASE 2C 3 388 IPR015655 GO:0004722|GO:0006470
Gso2g1940 389 SUPERFAMILY PP2C-like 134 386 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g1940 Gso-Chr2 43708531 43710992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g1940 1 389 PP2C-type Phosphatase Gene Family AT2G30020 64.604 4.15e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g1940 K17506 - gmx:100797934 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1645 14 48520364 48522687 Gso2g1940 2 43708531 43710992 GST
Gso18g0540 18 5583291 5585464 Gso2g1940 2 43708531 43710992 PCT
Gso2g1940 2 43708531 43710992 Gso18g0540 18 5583291 5585464 PCT